View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8538_low_2 (Length: 641)

Name: NF8538_low_2
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8538_low_2
NF8538_low_2
[»] chr7 (3 HSPs)
chr7 (132-312)||(3270423-3270605)
chr7 (17-135)||(3270897-3271015)
chr7 (415-456)||(10054159-10054200)
[»] chr5 (3 HSPs)
chr5 (395-495)||(24131458-24131558)
chr5 (413-494)||(7742091-7742171)
chr5 (102-168)||(17017049-17017115)
[»] chr6 (2 HSPs)
chr6 (403-467)||(9395809-9395873)
chr6 (414-472)||(16440190-16440248)
[»] chr4 (1 HSPs)
chr4 (413-473)||(25367065-25367125)
[»] chr1 (2 HSPs)
chr1 (102-174)||(27415583-27415655)
chr1 (308-382)||(22666630-22666704)
[»] chr3 (1 HSPs)
chr3 (413-466)||(21828436-21828489)
[»] chr8 (1 HSPs)
chr8 (436-567)||(28259675-28259805)
[»] chr2 (1 HSPs)
chr2 (443-495)||(21847648-21847700)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 132 - 312
Target Start/End: Complemental strand, 3270605 - 3270423
Alignment:
Q  132 tttaggaccgaccctaacggactttgggttttatcggatcgggttaaaagccttgttttaaaatgggctctaaaaatactacatgagcccgaccctatac 231  Q
    ||||||||| |||||||| | |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  3270605 tttaggacctaccctaacaggctttgggttttaacgggtcgggttaaaagccttgttttaaaacgggctctaaaaatactacctgagcccgaccctatac 3270506  T
Q  232 gggttgtaggctaaacgggtcagtccgtcatatatttaaaacaa--aatattgtttcctctaataacaagaaaaccaattata 312  Q
    |||||||||||||||||| |||||||||||||||||||||| ||  || ||| ||||||||| ||||||||||||||||||||    
T  3270505 gggttgtaggctaaacggatcagtccgtcatatatttaaaaaaaataaaattatttcctctagtaacaagaaaaccaattata 3270423  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 3271015 - 3270897
Alignment:
Q  17 actcctaatacgaaatgcggcatattatttttcattaatatttagataacactattgtattgtggtataatacaatggttattggtagagcttttaaaac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||    
T  3271015 actcctaatacgaaatgcggcatattatttttcattaatatttagataacactattgtgttgtggtataatacaatgtctattggtagagctttcaaaac 3270916  T
Q  117 ggactgctcgacccgttta 135  Q
    ||||||||| |||||||||    
T  3270915 ggactgctcaacccgttta 3270897  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 10054200 - 10054159
Alignment:
Q  415 agtaaattgattattttcgaaattaacttcttttaattgaat 456  Q
    ||||||||| |||||||| ||||||| |||||||||||||||    
T  10054200 agtaaattgcttattttctaaattaatttcttttaattgaat 10054159  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 495
Target Start/End: Original strand, 24131458 - 24131558
Alignment:
Q  395 cttcgtctgaacatgactgtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgttagagttttgactgatcttaaggg 494  Q
    ||||||| ||||| |||  |||||||||| |||||||| |||||||  ||||||||||||||||| ||||| || ||||  |||||||| ||||||||||    
T  24131458 cttcgtccgaacaagacattagtaaattgtttattttcaaaattaatctcttttaattgaatctaagtatgctttttaggattttgactcatcttaaggg 24131557  T
Q  495 g 495  Q
    |    
T  24131558 g 24131558  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 494
Target Start/End: Complemental strand, 7742171 - 7742091
Alignment:
Q  413 gtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgttagagttttgactgatcttaaggg 494  Q
    ||||||||||| ||| |||| ||||||| || |||| |||||||||| |||||||| |||| ||||||||| ||||||||||    
T  7742171 gtagtaaattgcttaatttctaaattaaattattttcattgaatctaagtatgatt-ttagggttttgactcatcttaaggg 7742091  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 17017115 - 17017049
Alignment:
Q  102 tagagcttttaaaacggactgctcgacccgtttaggaccgaccctaacggactttgggttttatcgg 168  Q
    ||||||| | ||||||||| || ||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  17017115 tagagctgtcaaaacggacggcccgacccgtttaggtccggccctaacgggcttcgggttttatcgg 17017049  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 467
Target Start/End: Complemental strand, 9395873 - 9395809
Alignment:
Q  403 gaacatgactgtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgat 467  Q
    ||||| ||| ||||||| |||||||||||| ||| |||  ||||||||||||||||| |||||||    
T  9395873 gaacaagacagtagtaatttgattattttctaaaataatctcttttaattgaatctaagtatgat 9395809  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 16440190 - 16440248
Alignment:
Q  414 tagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgtta 472  Q
    |||||||||| ||||||||  |||||| ||||||||||||| |||| |||| |||||||    
T  16440190 tagtaaattgcttattttcttaattaatttcttttaattgattctaagtatcattgtta 16440248  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 25367065 - 25367125
Alignment:
Q  413 gtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgttag 473  Q
    ||||||||||  |||||||| ||||||| ||||||||||||||| |  |||||||||||||    
T  25367065 gtagtaaattacttattttctaaattaatttcttttaattgaatatgagtatgattgttag 25367125  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 27415655 - 27415583
Alignment:
Q  102 tagagcttttaaaacggactgctcgacccgtttaggaccgaccctaacggactttgggttttatcggatcggg 174  Q
    ||||||| | ||||||||| |  |||||||||||||||||  |||||||| ||| |||||||| |||||||||    
T  27415655 tagagctgtcaaaacggacggtccgacccgtttaggaccgggcctaacgggcttcgggttttagcggatcggg 27415583  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 22666630 - 22666704
Alignment:
Q  308 ttatacatgttcaaatcattgatagccatattctatgattcttgcacactcgaaa-aaatattagcatattcaatt 382  Q
    ||||||||||||||  || ||||||   ||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  22666630 ttatacatgttcaagccactgatagatttattctatgat-cttgcacacttgaaataaatattagcatattcaatt 22666704  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 466
Target Start/End: Complemental strand, 21828489 - 21828436
Alignment:
Q  413 gtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatga 466  Q
    ||||||||||| |||||||| |||| || ||||||| |||||||||| ||||||    
T  21828489 gtagtaaattgcttattttcaaaataaaattcttttcattgaatctaagtatga 21828436  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 567
Target Start/End: Complemental strand, 28259805 - 28259675
Alignment:
Q  436 attaacttcttttaattgaatctacgtatgattgttagagttttgactgatcttaaggggtcgccgcaattataaccagttaaaatgtggcggcat-gaa 534  Q
    ||||| |||||||||| ||||||  |||||| | |||||||||| ||| ||||||||||  ||  |||||||||||  |||||| || ||||  ||  ||    
T  28259805 attaaattcttttaatcgaatcttagtatgaat-ttagagttttaactcatcttaagggaacgttgcaattataactggttaaattgcggcgatataaaa 28259707  T
Q  535 ttaaaacttcccattgttatatcacggggtcat 567  Q
    ||||||||| |||||| || |||||||||||||    
T  28259706 ttaaaactt-ccattgctacatcacggggtcat 28259675  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 495
Target Start/End: Complemental strand, 21847700 - 21847648
Alignment:
Q  443 tcttttaattgaatctacgtatgattgttagagttttgactgatcttaagggg 495  Q
    |||||||||||||| || ||||||||||||| |||| |||| ||||| |||||    
T  21847700 tcttttaattgaatataagtatgattgttagggtttagactcatctttagggg 21847648  T

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