View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_21 (Length: 206)
Name: NF8538_low_21
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 4387860 - 4387689
Alignment:
| Q |
19 |
acaattatttttatagtctattatcaccaattctctgtatgcttgttgttgttgatttatcttgaataatgacttctgtatgttttcctgtcaatctttt |
118 |
Q |
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| T |
4387860 |
acaattattttgatagtctattatcaccaattctctgtatgtttgttattgttgatttatgttgaataatgacttctgtatgttttcctgtcaatctttt |
4387761 |
T |
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| Q |
119 |
ttcatggtgaaagaattggtggaactatcgccttatcacactcacaatcacagatatcaatgtcgtaactgt |
190 |
Q |
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| T |
4387760 |
ttcatggtgaaagaattggtggaactatcgccttatcacactcacaaacacagatatcaatgtcgtaactgt |
4387689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 4375664 - 4375522
Alignment:
| Q |
45 |
ccaattctctgtatgcttgttgttgttgatttatcttgaataatgacttctgtatgttttcctgtcaatcttttttcatggtgaaagaattggtggaact |
144 |
Q |
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| T |
4375664 |
ccaattctctttatggttgttattgttgatttatcttgaataattacgtatgtatgttttcctttcaatcttttttcatggtgaaagaattgt---aact |
4375568 |
T |
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| Q |
145 |
atcgccttatcacactcacaatcacagatatcaatgtcgtaactgt |
190 |
Q |
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| T |
4375567 |
atcatctcaacaaactcacaatcacagatttcaatgttgtgactgt |
4375522 |
T |
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