View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8538_low_3 (Length: 568)

Name: NF8538_low_3
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8538_low_3
NF8538_low_3
[»] chr3 (12 HSPs)
chr3 (20-560)||(5577823-5578361)
chr3 (164-352)||(32077376-32077546)
chr3 (267-361)||(51646970-51647064)
chr3 (282-361)||(8507115-8507194)
chr3 (164-230)||(51646885-51646951)
chr3 (164-215)||(4737800-4737851)
chr3 (164-230)||(46835541-46835607)
chr3 (31-88)||(5559694-5559750)
chr3 (165-202)||(8508672-8508709)
chr3 (180-230)||(8507228-8507279)
chr3 (266-308)||(45640634-45640676)
chr3 (31-88)||(5551145-5551200)
[»] chr4 (7 HSPs)
chr4 (267-362)||(47965429-47965524)
chr4 (266-362)||(52525824-52525920)
chr4 (171-230)||(47965540-47965599)
chr4 (150-207)||(14866628-14866686)
chr4 (456-499)||(55819838-55819881)
chr4 (164-205)||(30179071-30179112)
chr4 (178-215)||(52525953-52525990)
[»] chr5 (1 HSPs)
chr5 (373-502)||(19085162-19085292)
[»] chr1 (5 HSPs)
chr1 (267-361)||(20602303-20602396)
chr1 (155-230)||(20602208-20602284)
chr1 (461-502)||(50991201-50991242)
chr1 (436-499)||(1068472-1068535)
chr1 (164-215)||(29308696-29308747)
[»] chr8 (4 HSPs)
chr8 (164-215)||(14836399-14836450)
chr8 (261-362)||(30850085-30850186)
chr8 (164-215)||(27229237-27229288)
chr8 (164-215)||(30850214-30850265)
[»] chr6 (3 HSPs)
chr6 (373-498)||(30908158-30908284)
chr6 (164-215)||(29279776-29279827)
chr6 (163-215)||(9852102-9852154)
[»] chr2 (4 HSPs)
chr2 (164-215)||(28296914-28296965)
chr2 (164-215)||(24538237-24538288)
chr2 (171-215)||(22142305-22142349)
chr2 (164-198)||(7828944-7828978)
[»] chr7 (2 HSPs)
chr7 (154-215)||(27965240-27965304)
chr7 (171-215)||(45824591-45824635)
[»] scaffold0596 (1 HSPs)
scaffold0596 (168-215)||(1695-1742)
[»] scaffold0045 (1 HSPs)
scaffold0045 (451-484)||(11489-11522)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 20 - 560
Target Start/End: Complemental strand, 5578361 - 5577823
Alignment:
Q  20 aaaagccaactatttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578361 aaaagccaactatttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttctacaaagtaaacttctattataaaggagagag 5578262  T
Q  120 atataagtcgatcttttgaataatctagttatatcatatcatatatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  5578261 atataagtcgatcttttgaataatctagttatatcatatcatatatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaattctg 5578162  T
Q  220 atggttttggccagaacagtttggagccaaaaaagttgttatggcagttagatgcatctgtgttgatctctacacaatccatttgttcccggtaaacaca 319  Q
    ||||||||||| |||||| |||||||||||||||  |||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||  |||  |||    
T  5578161 atggttttggctagaacaatttggagccaaaaaaactgttctggccgttagatgcatttgtgttgatctctgcacaatccatttgttcccaataa--aca 5578064  T
Q  320 gtctttcaatttcaactcacaactgcattggtatcatacacactatgaaaatatagcattttccaatcctatattttctttattggcatatgtgaaacca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578063 gtctttcaatttcaactcacaactgcattggtatcatacacactatgaaaatatagcattttccaatcctatattttctttattggcatatgtgaaacca 5577964  T
Q  420 tttttctccaattccaatatggattctgcaattattgatgcccacctctttctcctccatttttacccttctcttctctcttcnnnnnnnnnnatctaag 519  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  5577963 tttttctccaattccgatatggattctgcaattattgatgcccacctctttctcctccatttttacccttctcttctctcttcttttgttttgatctaag 5577864  T
Q  520 ttaccatacccttgacaaataacttttccccaacaacacga 560  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  5577863 ttaccatagccttgacaactaacttttccccaacaacacga 5577823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 164 - 352
Target Start/End: Complemental strand, 32077546 - 32077376
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggccagaacagtttggagccaaaaaagttgttatgg 263  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||               |||||     |||| |||    
T  32077546 atacttatttctaatatgaataacattgctaacaatttatgccaaccctaatcttgatggttttggct--------------ccaaac----tgttctgg 32077465  T
Q  264 cagttagatgcatctgtgttgatctctacacaatccatttgttcccggtaaacacagtctttcaatttcaactcacaactgcattggta 352  Q
    | ||||||||||| |||||||||||| |||||| |||| | |||||  |||||| ||||||||||||||||||||||||||||||||||    
T  32077464 ccgttagatgcatttgtgttgatctccacacaacccatctattcccaataaacaaagtctttcaatttcaactcacaactgcattggta 32077376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 51646970 - 51647064
Alignment:
Q  267 ttagatgcatctgtgttgatctctacacaatccatttgttcccggtaaacacagtctttcaatttcaactcacaactgcattggtatcatacaca 361  Q
    ||||||| |||||| |||||||| |||||||||||||||||||  ||||||| |||||||||||||| ||||||||| |||||||| ||||||||    
T  51646970 ttagatgaatctgtattgatctccacacaatccatttgttcccaataaacactgtctttcaatttcatctcacaacttcattggtaacatacaca 51647064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 361
Target Start/End: Complemental strand, 8507194 - 8507115
Alignment:
Q  282 ttgatctctacacaatccatttgttcccggtaaacacagtctttcaatttcaactcacaactgcattggtatcatacaca 361  Q
    |||||||| ||| |||||||||||||||  ||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  8507194 ttgatctccacataatccatttgttcccaataaacactgtctttcaatttcaactcacaacttcattggtaacatacaca 8507115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 51646885 - 51646951
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 230  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||    
T  51646885 atacttatttctaatatgaataacattgttaacaatttgtgtcaaccctaatcttgatgtttttggc 51646951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 4737851 - 4737800
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  4737851 atacttatttctaatatgaataacattgctaacaaattgtgccaaccctaat 4737800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 46835607 - 46835541
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 230  Q
    ||||||||||||||||||||||||| | ||||||| ||||| |||||||||| | ||||||||||||    
T  46835607 atacttatttctaatatgaataacaatattaacaaattgtgtcaaccctaatcttgatggttttggc 46835541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 5559750 - 5559694
Alignment:
Q  31 atttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttct 88  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  5559750 atttaagcaattcatgatagtaagc-aaatgtcctgccacgcgtatttttcattttct 5559694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 8508709 - 8508672
Alignment:
Q  165 tacttatttctaatatgaataacattgttaacaatttg 202  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8508709 tacttatttctaatatgaataacattgttaacaatttg 8508672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 8507279 - 8507228
Alignment:
Q  180 tgaataacattgttaacaatttgtgccaaccc-taatgtagatggttttggc 230  Q
    ||||||| |||||||||||||||||||||||| |||| | ||||||||||||    
T  8507279 tgaataatattgttaacaatttgtgccaacccttaatcttgatggttttggc 8507228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 45640676 - 45640634
Alignment:
Q  266 gttagatgcatctgtgttgatctctacacaatccatttgttcc 308  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||    
T  45640676 gttagatgaatctgtgttgatctccacacaatccatatgttcc 45640634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 5551200 - 5551145
Alignment:
Q  31 atttaagcaattcatgatagtaagcaaaatgatctgccacgcgtatttttcattttct 88  Q
    ||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||||||    
T  5551200 atttaagaaattcatgatagtaagc-aaatg-tctaccacgcgtatatttcattttct 5551145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 47965524 - 47965429
Alignment:
Q  267 ttagatgcatctgtgttgatctctacacaatccatttgttcccggtaaacacagtctttcaatttcaactcacaactgcattggtatcatacacac 362  Q
    ||||||||||||||||||||||| ||||||||||| ||||||   |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  47965524 ttagatgcatctgtgttgatctccacacaatccatctgttccgaataaacacagtctttcaatttcaactcacaagtgcatcggtaacatacacac 47965429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 52525920 - 52525824
Alignment:
Q  266 gttagatgcatctgtgttgatctctacacaatccatttgttcccggtaaacacagtctttcaatttcaactcacaactgcattggtatcatacacac 362  Q
    |||||||||||||||||||||| | ||||||||||| |||| ||  | |||| ||||||||||||||||| ||||||| |||||||| |||||||||    
T  52525920 gttagatgcatctgtgttgatcaccacacaatccatctgtttccaatgaacatagtctttcaatttcaacacacaactacattggtaacatacacac 52525824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 47965599 - 47965540
Alignment:
Q  171 tttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 230  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||    
T  47965599 tttctaatatgaataacattgctaacaatttgtgccaaccctaatcctgatggttttggc 47965540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 14866686 - 14866628
Alignment:
Q  150 atatcatatcatat-atacttatttctaatatgaataacattgttaacaatttgtgcca 207  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  14866686 atatcatatcatatcatacttatttctaatatgaataacaatgttaacaaattgtgcca 14866628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 499
Target Start/End: Complemental strand, 55819881 - 55819838
Alignment:
Q  456 gatgcccacctctttctcctccatttttacccttctcttctctc 499  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  55819881 gatgcacacctctttctcctccatttttatccttctcttctctc 55819838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 30179112 - 30179071
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgc 205  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  30179112 atacttatttctaatatgaataacattgctaacaaattgtgc 30179071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 52525990 - 52525953
Alignment:
Q  178 tatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  52525990 tatgaataacattgctaacaatttgtgtcaaccctaat 52525953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 373 - 502
Target Start/End: Complemental strand, 19085292 - 19085162
Alignment:
Q  373 tagcattttccaatcctatattttctttattggcatatgtgaaac-catttttctccaattccaatatggattctgcaattattgatgcccacctctttc 471  Q
    |||||||||||||  || |||||||| ||||||| | | |||||| |||||| |||||||||| |||| || ||  || |||| ||| ||||||||||||    
T  19085292 tagcattttccaacgctttattttctctattggcttctttgaaactcattttcctccaattcccatattgactccacacttatcgatacccacctctttc 19085193  T
Q  472 tcctccatttttacccttctcttctctcttc 502  Q
    |||||||||||||||||||||||||||||||    
T  19085192 tcctccatttttacccttctcttctctcttc 19085162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 20602303 - 20602396
Alignment:
Q  267 ttagatgcatctgtgttgatctctacacaatccatttgttcccggtaaacacagtctttcaatttcaactcacaactgcattggtatcatacaca 361  Q
    ||||||| |||| | |||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  20602303 ttagatgaatctctattgatctc-acacaatccatttgttcccaataaacactgtctttcaatttcaactcacaacttcattggtaacatacaca 20602396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 20602208 - 20602284
Alignment:
Q  155 atatcatat-atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaatgtagatggttttggc 230  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  20602208 atatcatatcatatttaattctaatatgaataacattgttaacaatttgtgccaaccctcatcttgatggttttggc 20602284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 502
Target Start/End: Original strand, 50991201 - 50991242
Alignment:
Q  461 ccacctctttctcctccatttttacccttctcttctctcttc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50991201 ccacctctttctcctccatttttacccttctcttctctcttc 50991242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 499
Target Start/End: Original strand, 1068472 - 1068535
Alignment:
Q  436 atatggattctgcaattattgatgcccacctctttctcctccatttttacccttctcttctctc 499  Q
    ||||||| |||||| | || ||||| ||||||||||||||||||||||| ||||||||||||||    
T  1068472 atatggactctgcactcatggatgcacacctctttctcctccatttttatccttctcttctctc 1068535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 29308696 - 29308747
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  29308696 atacttatttctaatatgaataacattgttaacaaattgtgtcaaccttaat 29308747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 14836399 - 14836450
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14836399 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 14836450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 30850186 - 30850085
Alignment:
Q  261 tggcagttagatgcatctgtgttgatctctacacaatccatttgttcccggtaaacacagtctttcaatttcaactcacaactgcattggtatcatacac 360  Q
    |||| |||||||  || |||||||||||  |||||||| ||||||||||  |||||||  ||||||||||| || |||||| |||||||||| |||||||    
T  30850186 tggccgttagatcaatatgtgttgatctacacacaatctatttgttcccaataaacactatctttcaattttaaatcacaagtgcattggtaacatacac 30850087  T
Q  361 ac 362  Q
    ||    
T  30850086 ac 30850085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 27229237 - 27229288
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||||||||||||||| ||||||||| |||||| | ||||||||||    
T  27229237 atacttatttctaatatgaatagcattgttaataatttgcgtcaaccctaat 27229288  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 30850265 - 30850214
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    ||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  30850265 atacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaat 30850214  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 498
Target Start/End: Complemental strand, 30908284 - 30908158
Alignment:
Q  373 tagcattttccaatcctatattttctttattggcatatgtgaaac-catttttctccaattccaatatggattctgcaattattgatgcccacctctttc 471  Q
    |||||||||||||  || |||||||| ||||||| | | |||||| |||||| |||||||||  |||| || ||  || |||| ||| ||||||||||||    
T  30908284 tagcattttccaacgctttattttctctattggcttctttgaaactcattttcctccaattctcatattgactccacacttatcgatacccacctctttc 30908185  T
Q  472 tcctccatttttacccttctcttctct 498  Q
    |||||||||||||||| ||||||||||    
T  30908184 tcctccatttttacccctctcttctct 30908158  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 29279776 - 29279827
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  29279776 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaat 29279827  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 9852102 - 9852154
Alignment:
Q  163 tatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  9852102 tatacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaat 9852154  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 28296965 - 28296914
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  28296965 atacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaat 28296914  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 24538237 - 24538288
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  24538237 atacttatttctaatatgaataacaatgttaacaaattgtgtcaaccctaat 24538288  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 22142349 - 22142305
Alignment:
Q  171 tttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||    
T  22142349 tttctaatatgaatagcattgttaacaaattgtgccaaccctaat 22142305  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 7828978 - 7828944
Alignment:
Q  164 atacttatttctaatatgaataacattgttaacaa 198  Q
    ||||||||||||||||||||||||| |||||||||    
T  7828978 atacttatttctaatatgaataacaatgttaacaa 7828944  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 27965304 - 27965240
Alignment:
Q  154 catatcatat-atacttatttctaatatg--aataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  27965304 catatcatatcatacttatttctaatatataaataacattgttaacaatttgtgccaaccctaat 27965240  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 45824591 - 45824635
Alignment:
Q  171 tttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    |||||||||  |||| ||||| |||||||||||||||||||||||    
T  45824591 tttctaatagcaatagcattgctaacaatttgtgccaaccctaat 45824635  T

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Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 1742 - 1695
Alignment:
Q  168 ttatttctaatatgaataacattgttaacaatttgtgccaaccctaat 215  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1742 ttatttctaatatgaataacaatgttaacattttgtgccaaccctaat 1695  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 484
Target Start/End: Complemental strand, 11522 - 11489
Alignment:
Q  451 ttattgatgcccacctctttctcctccattttta 484  Q
    ||||||||||||||||||||||||| ||||||||    
T  11522 ttattgatgcccacctctttctccttcattttta 11489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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