View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_4 (Length: 523)
Name: NF8538_low_4
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 34384436 - 34384941
Alignment:
| Q |
1 |
actagtttgccttgctaggttgctactgaagaaaagaaaaatcttggtcctagacgaggcaactgcatccattgacactgcaactgataatttaattcag |
100 |
Q |
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| T |
34384436 |
actagtttgccttgctaggttgctactgaagaaaagaaaaatcttggtcctagacgaggcaactgcatccattgacactgcaactgataatttaattcag |
34384535 |
T |
|
| Q |
101 |
aagactattagggaagaaacaagtggatgcacagtcattacagtagcacatagaattcctactgtcattgacaatgatttggttttggtgcttaatgaag |
200 |
Q |
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| T |
34384536 |
aagactattagggaagaaacaagtggatgcacagtcattacagtagcacatagaattcctactgtcattgacaatgatttggttttggtgcttaatgaag |
34384635 |
T |
|
| Q |
201 |
gtacaaaaatgcactgagtagacagtatgcaattcgatatgtatgattgtaaactgataatgaaacctaggaaaacataatgttggagggtgttgtatcc |
300 |
Q |
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| T |
34384636 |
gtacaaaaatgcactgagtagacagtatgcaattcgatatgtatgattgtaaactgataatgaaacctaggaaaacataatgttggagggtgttgtatcc |
34384735 |
T |
|
| Q |
301 |
tttcattcataaatatttaacatgggaggtgggggccgagaataggcgcagagttagtttgaatttgacataattctcaccaagtgtaacagcatattaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34384736 |
tttcattcataaatatttaacatgggaggtgggggccgagaataggcgcagagttagtttgaatttgacataattctcaccaagtgtaacagcatattaa |
34384835 |
T |
|
| Q |
401 |
tgcacaccattttgtaagctttgagctgataaacactattattctgatgtatacagggacaattgcggagtatgatcaaccatctcaattgctacaagac |
500 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34384836 |
tgcacaccattttgtaagctttgagctgatagacactattattctgatgtatacagggacaattgcggagtatgatcaaccatctcaattgctacaagcc |
34384935 |
T |
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| Q |
501 |
aattct |
506 |
Q |
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|||||| |
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| T |
34384936 |
aattct |
34384941 |
T |
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