View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_5 (Length: 506)
Name: NF8538_low_5
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_5 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 13486155 - 13485944
Alignment:
| Q |
20 |
catgcaaatggatactttctatttactatatctaaagatgcacgagaaataaggaaaatcattgccattttgaaaactacggaaaatgtaagttct---- |
115 |
Q |
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| T |
13486155 |
catgcaaatggatactttctatttactatatctaaagatgcacaagaaatatggaaaatcattgccattttgaaaaccactgaaaatgtaagttctcttg |
13486056 |
T |
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| Q |
116 |
atgcttcatccgtaccggtcaatgttcccacaaaccattttgattatgtggatnnnnnnnttatgatgttactgaaacttcaattattgctccagttatt |
215 |
Q |
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| T |
13486055 |
atgcttcatccgtaccggccaatgttcccacaaaccattttgattatgtggataaaaaaattatgatgttactgaaacttcaattattgctccagttatt |
13485956 |
T |
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| Q |
216 |
gcatgttgaacc |
227 |
Q |
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| T |
13485955 |
gcatgttgaacc |
13485944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 221 - 343
Target Start/End: Complemental strand, 13485920 - 13485798
Alignment:
| Q |
221 |
ttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaaccatc |
320 |
Q |
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| T |
13485920 |
ttgaacctaatattgatcttgtttttaaaacctctgtcaaacaatgtgttgagtttatgagtcaagtagatcttatctctaataaggttgttaaaccatc |
13485821 |
T |
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| Q |
321 |
tagtacacttgatatttttgttg |
343 |
Q |
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| T |
13485820 |
tagtacacttgatatttttgttg |
13485798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 363 - 498
Target Start/End: Complemental strand, 13485746 - 13485613
Alignment:
| Q |
363 |
tcttgtttctgaaacatcaactgagaccaaataaatcaacaaaagaaaccgcccctaatgatgttggaccatcccatgtccaattagatattatctttga |
462 |
Q |
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| T |
13485746 |
tcttgtttctgaaacatcaactga--ccaaataaatcaacaaaagaaaccgccgctaatgattttggaccatcccatgtccaattagatattatctttga |
13485649 |
T |
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| Q |
463 |
actttcttttggaaatgttgttgatgtgtctctgct |
498 |
Q |
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| T |
13485648 |
actttcttttgaaaatgttgttgatgtgtctgtgct |
13485613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 36266 - 36392
Alignment:
| Q |
217 |
catgttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaac |
316 |
Q |
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| T |
36266 |
catgttgaacttaatgtcgatcttgtgtttgaaactcctgtgaaaccctgtgttgattatacgagtcaagtagatcatgtctctgataaggttgttaaaa |
36365 |
T |
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| Q |
317 |
catctagtacacttgatatttttgttg |
343 |
Q |
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| T |
36366 |
catctagtacacctgatatttttgttg |
36392 |
T |
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