View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_7 (Length: 392)
Name: NF8538_low_7
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 175 - 372
Target Start/End: Original strand, 30870197 - 30870402
Alignment:
| Q |
175 |
aaaaatatataaaaaagttaaatttaatgaatccacatta------gttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
268 |
Q |
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| T |
30870197 |
aaaaatatataaaaaagttaaatttaatgagtccacattactattagttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
30870296 |
T |
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| Q |
269 |
aaaagtatttataatacaga--atatatatattgacgtataattatactataatcaagtaatctgtgcacccgagcatgttgctgctgcacgcaaatgga |
366 |
Q |
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| T |
30870297 |
aaaagtatttataatacagaatatatatatattgacgtataattatactataatcaagtaatccgtgcacccgagcatgttgctgctgcacgcaaatgga |
30870396 |
T |
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| Q |
367 |
cagcag |
372 |
Q |
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|||||| |
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| T |
30870397 |
cagcag |
30870402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 30869930 - 30870015
Alignment:
| Q |
94 |
accttatatgaataatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
179 |
Q |
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| T |
30869930 |
accttatatgaatgatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
30870015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 30869861 - 30869896
Alignment:
| Q |
30 |
ttatactattatgcataaaaaatactgatattttgt |
65 |
Q |
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| T |
30869861 |
ttatactattatgcataaaaaatactgatattttgt |
30869896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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