View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8538_low_8 (Length: 347)
Name: NF8538_low_8
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8538_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 43524108 - 43523793
Alignment:
| Q |
20 |
cgcccccttcctcgcatccttggcgagccttctgtgcatcaaaattacagttaacaactacacatgccataaaaatcacaacttttcactctttnnnnnn |
119 |
Q |
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| T |
43524108 |
cgcccccttcctcgcatccttggcgagccttctgtgcatcaaaattacagttaacaactacacatgccataaaaatcacaacttttcactcttttaaaaa |
43524009 |
T |
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| Q |
120 |
nn-tcaaagacaagactat--attcacctccttcctcttcatattcatttaaaggttttacttgatcagccggaagaggagattgatatctgcatggaga |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
43524008 |
aaatcaaagacaagactattaattcacctccttcctcttcatattcatttaaaggttttacttgatcagccggaagaggaggttgatatctgcatgaaga |
43523909 |
T |
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| Q |
217 |
aaaacaacttagatcttgccacagagaatacatttaaagaaataaacaaaaaacaaaatcatcaaacatagtgggaaagatggcatcacttgtataaatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43523908 |
aaaacaacttagatcttgccacagagaatacatttaaagaaataaacaaaaaacaaaatcatcaaacatagtgggaaagatggcatcacttgtataaatc |
43523809 |
T |
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| Q |
317 |
atgactggaccttaat |
332 |
Q |
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|||||||||||||||| |
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| T |
43523808 |
atgactggaccttaat |
43523793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 43529890 - 43529582
Alignment:
| Q |
23 |
ccccttcctcgcatccttggcgagccttctgtgcatcaaaat-tacagttaacaactacacatgccataaaaatcacaacttttcactctttnnnnnnnn |
121 |
Q |
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|||||||| ||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||| |||| || |||||||||||| |
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| T |
43529890 |
ccccttccccgcatccttggtgagccttctgt--atcaaaaaatactgttaacaactacacatgccataatgatcataaattttcactcttttgaaata- |
43529794 |
T |
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| Q |
122 |
tcaaagacaagactat--attcacctccttcctcttcatattcatttaaaggttttacttgatcagccggaagaggagattgatatctgcatggagaaaa |
219 |
Q |
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| T |
43529793 |
tcaaagaaaaaactgttaacttgcctccttcctcttcatattcatttaaaggttttacttgatcagctggaagagggggttgatatctgcatgagaaaaa |
43529694 |
T |
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| Q |
220 |
acaacttagatcttgcc-acagagaatacatttaaagaaataaacaaaaaacaaaatcatcaaacatagtgggaaagatggcatcacttgtataaatcat |
318 |
Q |
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| T |
43529693 |
acgacttagattttgccaacagcgaatacaattaaaaaagtaaacaaaaaacagaactttcaaacaatatgggaaaaa--ccaggacttgtgtaaatcat |
43529596 |
T |
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| Q |
319 |
gactggaccttaat |
332 |
Q |
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|||||||||||||| |
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| T |
43529595 |
gactggaccttaat |
43529582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 43538826 - 43538752
Alignment:
| Q |
138 |
attcacctccttcctcttcatattcatttaaaggttttacttgatcagccggaagaggagattgatatctgcatg |
212 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
43538826 |
attcacctccttcgtcttcatattcattcaaaggttttacttgatcagctggaagaggaggttgatatctgcatg |
43538752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 43538939 - 43538878
Alignment:
| Q |
23 |
ccccttcctcgcatccttggcgagccttctgtgcatcaaaattacagttaacaactacacatgc |
86 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||| |
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| T |
43538939 |
ccccttcctcgcatccttggtgagccttctgt--ttcaaaattatagttaacaactatacatgc |
43538878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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