View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8538_low_9 (Length: 303)

Name: NF8538_low_9
Description: NF8538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8538_low_9
NF8538_low_9
[»] chr1 (1 HSPs)
chr1 (11-303)||(46364982-46365266)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 46364982 - 46365266
Alignment:
Q  11 gaaatttgaaatattgaaaaagacggcattctagcactgtcacattggattccccagagaggaacaacaagtctgcagttaatgtaaaatgtcttgctgc 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46364982 gaaatttgaaatattgaaaaagacggcattctagcattgtcacattggattccccagagaggaacaacaagtctgcagttaatgtaaaatgtcttgctgc 46365081  T
Q  111 cattttctccattcctcttcaagtcacacgactttgtacaaactaagaaaaataattaaatctaataagatgaataacaaagtgcatgatgtatgtttgg 210  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46365082 cattttctccattcctcttcaagtcacacgactttg--------aagaaaaataattaaatctaataagatgaataacaaagtgcatgatgtatgtttgg 46365173  T
Q  211 tatcaagcggattttcacggagcgtccctagctttgcaaaatcacactggttcaatgtctttccggcaaatcattaattatgaagcagacttc 303  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  46365174 tatcaagcggattttcacggtgcgtctctagctttgcaaaatcacactggttcaatgtctttccggcaaatcattaattatgtagaagacttc 46365266  T

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