View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8539_high_1 (Length: 501)
Name: NF8539_high_1
Description: NF8539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8539_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 49963808 - 49963335
Alignment:
| Q |
13 |
ggacatcaacattgtatatttatatgatttatgaattttttatcattgtttctttatcctcatgtccaactttcacactcattcgtatcggaatatgatg |
112 |
Q |
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| T |
49963808 |
ggacatcaacattgtatatttatatgatttatgaattttttatcattgtttctttattctcatgtccaactttcacactcatttatatcggaatacgatg |
49963709 |
T |
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| Q |
113 |
ccgtgaagaaatacttctgctgtgtttgggtgtgtttgtcacctcaaacaaatgtacgtctatattgcttcttgatgtgaaaacaagaagctaacattgc |
212 |
Q |
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| T |
49963708 |
ccgtgaagaaatacttctactgtgtttgggtgcgtttgtcacctcaaacaaatgtacgtctatatttctttttgatgtgaaaacaagaagctaacattgc |
49963609 |
T |
|
| Q |
213 |
tagcttctagaaaacacgcgtgtttgatgcctatttgccgcagaaacaaacagatacttggttacaaaatcaaataaaaattatttgagaacacacaaac |
312 |
Q |
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| T |
49963608 |
tagcttctagaaaacacgcgtgtttgatgcctatttgccgcagaaacagacaaatacttggttacaaaatcaaataaaaattatttgagaacagacaaac |
49963509 |
T |
|
| Q |
313 |
ataaacatcatgtcattattttaaaaatacaaatcatttcattctcgcttctctattttacctttttgtgaccacacgagactttttcgggtgtcgaaat |
412 |
Q |
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| T |
49963508 |
ataaacatcatgtcattattttaaaaatacaaatcatttcattctcgcttctcttttttacctttttgtgaccacaagagactttttccggtgtcgaaat |
49963409 |
T |
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| Q |
413 |
atgtgtgtctgatcaacacacaactgcttattttagtcccaattgccaaagttcaaagagggcacgtaatttct |
486 |
Q |
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| T |
49963408 |
atgtgtgtctgatcaacacacaactgcttattttagtcccaattgccaaagttcaaagagggcacgtaatttct |
49963335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 12844142 - 12844029
Alignment:
| Q |
132 |
ctgtgtttgggtgt--gtttgtcacctcaaacaaatgtacgtctatattgcttcttgatgtgaaaacaagaagctaacattgctagcttctagaaaacac |
229 |
Q |
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|||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||| |||||| |||||||| ||| |||||| | |||| | |
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| T |
12844142 |
ctgtgtttggttgtacgtttgtcacctcaaact----tacgtctatattgctttttgatgttaaaacatgaagctaatatttgtagcttatgtaaaaaat |
12844047 |
T |
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| Q |
230 |
gcgtgtttgatgcctatt |
247 |
Q |
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| T |
12844046 |
gcatgtttgacgcctatt |
12844029 |
T |
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