View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8539_high_3 (Length: 366)
Name: NF8539_high_3
Description: NF8539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8539_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 49824676 - 49824485
Alignment:
| Q |
27 |
tttggtgttagcaatggtgtttttcgcggtgcgtacatctaagccgatctttagaaaaaggtcgagacatttctccttctctgagatatcctccttcgta |
126 |
Q |
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| T |
49824676 |
tttgttgttagcaatggtgtttttcgcggtgcgttcatctaagccgatctttagaaaaagatcgagacatttctccttctctgagatatcctccttcgta |
49824577 |
T |
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| Q |
127 |
ggcatcttcttcttgttcgattgaaactattaattagggttttgcgtttcgtgagtataaaaacaaagcttagtctacggatgataaataaa |
218 |
Q |
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| T |
49824576 |
ggcatcttcttcttgttcgattgaaactattaattagggttttgcgtttcgtgagtataaaaacaaagcttagtctacggatgataaataaa |
49824485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 49824488 - 49824388
Alignment:
| Q |
252 |
taaacaatcatagtttgaattacagaaggagaaagtaagaatgggtcatagagcgtggaacacaagcagtatagaaaaatcgaaccttgtgtgtgtttgt |
351 |
Q |
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| T |
49824488 |
taaacaattatagtttgaattacagaagaagaaagtaagaatgggtcatagagcgtggaacacaagcagtatagaaaaatcgaacc-tgtgtgtgtttgt |
49824390 |
T |
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| Q |
352 |
gt |
353 |
Q |
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| T |
49824389 |
gt |
49824388 |
T |
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