View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8539_high_4 (Length: 302)

Name: NF8539_high_4
Description: NF8539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8539_high_4
NF8539_high_4
[»] chr2 (3 HSPs)
chr2 (1-167)||(44726996-44727164)
chr2 (36-133)||(44726125-44726222)
chr2 (37-125)||(44727805-44727894)
[»] chr5 (2 HSPs)
chr5 (168-279)||(33432924-33433035)
chr5 (168-271)||(33433812-33433915)
[»] chr3 (2 HSPs)
chr3 (167-279)||(19251702-19251814)
chr3 (167-271)||(19252590-19252694)
[»] chr7 (1 HSPs)
chr7 (168-244)||(25442213-25442289)
[»] chr6 (1 HSPs)
chr6 (179-252)||(34991999-34992072)
[»] chr4 (2 HSPs)
chr4 (179-280)||(12826112-12826213)
chr4 (179-252)||(12827406-12827479)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 44726996 - 44727164
Alignment:
Q  1 aatgttattaaagacccattgcattaccactaatagatgataaaatattttgaaaagactactcaatagacaaaatcgtgttgaaggactttctccttta 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44726996 aatgttattaaagacccattgtattaccactaatagatgataaaatattttgaaaagactactcaatagacaaaatcgtgttgaaggactttctccttta 44727095  T
Q  101 tgccatgccttcaataattatttcccaacatatatcttttctc--atatacacacacaggtaatggctt 167  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44727096 tgccatgccttcaataattatttcccaacatatatcttttctcatatatacacacacaggtaatggctt 44727164  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 44726125 - 44726222
Alignment:
Q  36 gatgataaaatattttgaaaagactactcaatagacaa-aatcgtgttgaaggactttctcctttatgccatgccttcaataattatttcccaacatat 133  Q
    ||||||||| ||||| |||||||||||||||||||||| ||   ||||||||||| ||| |||||||| ||||||| |||||||| ||||| |||||||    
T  44726125 gatgataaagtattt-gaaaagactactcaatagacaagaaaaatgttgaaggaccttcacctttatgtcatgcctccaataattttttccaaacatat 44726222  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 44727805 - 44727894
Alignment:
Q  37 atgataaaatattttgaaaagactactcaatagacaaaatcgtgtt-gaaggactttctcctttatgccatgccttcaataattatttcc 125  Q
    ||||||||  |||||||||||||||| ||||||||||||   | || |||||||||||||||||||| ||||||| |||||||| |||||    
T  44727805 atgataaagaattttgaaaagactacccaatagacaaaaaaatattcgaaggactttctcctttatgtcatgcctccaataattttttcc 44727894  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 33432924 - 33433035
Alignment:
Q  168 gagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaat 267  Q
    |||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||||| | | ||||||||||| |||||||||| | |||||||||    
T  33432924 gagttcatctttgctccatttacacttgctccatttacccctgctcagtgcatagatgagtgacacgtggcaaaaataaattcaagggctgggattaaat 33433023  T
Q  268 ggtttaaaatag 279  Q
    ||||||||||||    
T  33433024 ggtttaaaatag 33433035  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 33433915 - 33433812
Alignment:
Q  168 gagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaat 267  Q
    |||| ||| |||||||||||||| | || | ||||||||||| ||||||||||| |||||| | | ||| || |||| |||||||||| |  ||||||||    
T  33433915 gagtccatctttgctccatttacgcctgctccatttacccctattcagtgcatatatgagtgacacgtgacagaaataaattcaagggctgtgattaaat 33433816  T
Q  268 ggtt 271  Q
    ||||    
T  33433815 ggtt 33433812  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 19251702 - 19251814
Alignment:
Q  167 tgagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaa 266  Q
    ||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||| | | ||||||||||| ||||| |||  | ||||||||    
T  19251702 tgagttcatctttactccatttacacttgctccatttacccctgttcagtgcatagatgagtgacacgtggcaaaaataaattccaggcctgggattaaa 19251801  T
Q  267 tggtttaaaatag 279  Q
    |||||||||||||    
T  19251802 tggtttaaaatag 19251814  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 271
Target Start/End: Complemental strand, 19252694 - 19252590
Alignment:
Q  167 tgagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaa 266  Q
    ||||| ||| |||||||||||||| | || | ||||||||||||||||||||||| |||||| | | ||| || |||| ||||||||||||  |||||||    
T  19252694 tgagtccatctttgctccatttacgcctgctccatttacccctgttcagtgcatatatgagtgacacgtgacagaaataaattcaagggttgtgattaaa 19252595  T
Q  267 tggtt 271  Q
    |||||    
T  19252594 tggtt 19252590  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 25442289 - 25442213
Alignment:
Q  168 gagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaat 244  Q
    |||||||| | ||||||||||||||||| | ||||||||||||||||| | |||||||||| | |||||||||||||    
T  25442289 gagttcatctatgctccatttacacttgctccatttacccctgttcagggtatagatgagtgacatgtggcaaaaat 25442213  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 34992072 - 34991999
Alignment:
Q  179 tgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaa 252  Q
    |||||||||||  |||  | |||||||||||||||| ||||||||||||| | ||||||||||||  |||||||    
T  34992072 tgctccatttagccttcctccatttacccctgttcaatgcatagatgagtgacatgtggcaaaaaacaattcaa 34991999  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 12826112 - 12826213
Alignment:
Q  179 tgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaatggtttaaaata 278  Q
    |||||||||||  |||  | |||||||||||||||| ||| ||||||||| | |||||||||||   || | || |||| ||||| ||||||||||||||    
T  12826112 tgctccatttagccttcctccatttacccctgttcaatgcctagatgagtgacatgtggcaaaacaaaaattaacggtttggattgaatggtttaaaata 12826211  T
Q  279 gg 280  Q
    ||    
T  12826212 gg 12826213  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 12827479 - 12827406
Alignment:
Q  179 tgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaa 252  Q
    |||||||||||  |||  | |||||||||||||| | ||||||||||||| | ||||||||||||  |||||||    
T  12827479 tgctccatttagccttcctccatttacccctgtttaatgcatagatgagtgacatgtggcaaaaaaaaattcaa 12827406  T

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