View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8539_low_4 (Length: 351)
Name: NF8539_low_4
Description: NF8539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8539_low_4 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 74 - 328
Target Start/End: Complemental strand, 8978705 - 8978450
Alignment:
| Q |
74 |
ctaaggcggacggatatcaaacccgttttatatgggtccacctcctagcccttgcaaactaagattttcttagtatttggttatccgcttattttctctg |
173 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
8978705 |
ctaaggcggacggatatcaaacccgttctatatgggtccaccttctagcccttgcaaactaagattttcttagtatttagttatccgtttattttctctg |
8978606 |
T |
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| Q |
174 |
aggattttggcctagccctc-tcttatacataatattttctccttttttaataatatatatagagtaggtggtagcggacagaggttacagataggtgtc |
272 |
Q |
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|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
8978605 |
aggattttggcctagcccccctcttatacatattattttctccttttttaataatatatatagagtagatggtaacggacagaggttacagctaggtgtc |
8978506 |
T |
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| Q |
273 |
tacctagttagaatgtttttgtagcctcttaatgccctccctacttctttgcttat |
328 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8978505 |
aacctagttaggatgtttttgtagcctcttgatgccctccctacttctttgcttat |
8978450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 17116429 - 17116123
Alignment:
| Q |
17 |
aagatgcatatgctcctttcacaccttacctcactaaatgttagaggaagaaaattactaaggcggacggatatcaaacccgttttatatgggtccacct |
116 |
Q |
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|||||||| ||| || ||||||||||||||| ||||||||| | |||||||| ||||||||||| | ||||||||||||||| || ||||||||||||| |
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| T |
17116429 |
aagatgcagatgttcatttcacaccttaccttactaaatgtcataggaagaagattactaaggcagccggatatcaaacccg--ttctatgggtccacct |
17116332 |
T |
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| Q |
117 |
cctagcccttgcaaactaagattttc-ttagtatttggttatccgcttattttctctgaggattttggcctag-ccctctcttatacataatattttctc |
214 |
Q |
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|||||||||| |||| | ||| |||| ||||||||||||| || |||||||||||| ||| ||||||||||| ||| ||||| |||| | ||||||||| |
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| T |
17116331 |
cctagcccttccaaa-tgagagtttctttagtatttggttgtctgcttattttctccaagggttttggcctagtccccctcttgtacacattattttctc |
17116233 |
T |
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| Q |
215 |
cttt-tttaataat-atatatagagtaggtggtagcggacagaggttacagataggtgtctacctagttagaatgtttttgtagcctcttaatgccctcc |
312 |
Q |
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|||| ||| |||| |||||||||||||| ||||| ||| |||||||| | | |||| |||||||| |||| ||| | |||||||||||| |||||| |
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| T |
17116232 |
ctttattttttaataatatatagagtagggggtagaggatgaaggttacaattggatgtcaacctagttggaatatttgtatagcctcttaattccctcc |
17116133 |
T |
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| Q |
313 |
ctacttcttt |
322 |
Q |
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|||||||||| |
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| T |
17116132 |
ctacttcttt |
17116123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 22912411 - 22912300
Alignment:
| Q |
216 |
ttttttaataatatatatagagtaggtggtagcggacagaggttacagataggtgtctacctagttagaatgtttttgtagcctcttaatgccctcccta |
315 |
Q |
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|||||||||||| |||||| |||||||||||| || ||||||| ||| |||||||| |||||||| | |||||||||| | |||| || | |||||| |
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| T |
22912411 |
ttttttaataatgtatataaagtaggtggtagatgatagaggtttcagttaggtgtcaacctagttgggatgtttttgttgtctctcgatactgtcccta |
22912312 |
T |
|
| Q |
316 |
cttctttgctta |
327 |
Q |
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||||||| |||| |
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| T |
22912311 |
cttctttactta |
22912300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 17745542 - 17745477
Alignment:
| Q |
172 |
tgaggattttggcctag--ccctctcttatacataatattttctccttttttaataatatatatag |
235 |
Q |
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||||| ||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
17745542 |
tgagggttttggcctagtcccccctcttgtacatattattttctccttttttaataatatatatag |
17745477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 19473815 - 19473722
Alignment:
| Q |
159 |
cgcttattttctctgaggattttggcctagccctc--tcttatacataatattttctcctttttt---aataatatatatagagtaggtggtag |
247 |
Q |
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|||||||| | ||||||||| |||||||||||| | |||| |||||| ||||||||| |||||| |||||||| ||||||||| ||||||| |
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| T |
19473815 |
cgcttattctttctgaggatcttggcctagccccccctcttgtacatattattttctcttttttttttaataatatttatagagtatgtggtag |
19473722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 26651998 - 26652075
Alignment:
| Q |
171 |
ctgaggattttggcctag--ccctctcttatacataatattttctccttttttaataatatatatagagtaggtggtag |
247 |
Q |
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|||||| ||||| ||||| ||| ||||| |||||| ||||||||| |||||| |||||||||||||| |||||||||| |
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| T |
26651998 |
ctgagggttttgccctagtcccccctcttgtacatattattttctc-ttttttgataatatatatagaataggtggtag |
26652075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 55693 - 55665
Alignment:
| Q |
205 |
atattttctccttttttaataatatatat |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
55693 |
atattttctccttttttaataatatatat |
55665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 29845282 - 29845314
Alignment:
| Q |
215 |
cttttttaataatatatatagagtaggtggtag |
247 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
29845282 |
cttttttaataatatatattgagtaggtggtag |
29845314 |
T |
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