View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8539_low_5 (Length: 304)

Name: NF8539_low_5
Description: NF8539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8539_low_5
NF8539_low_5
[»] chr3 (10 HSPs)
chr3 (16-304)||(4142181-4142469)
chr3 (34-304)||(3754319-3754589)
chr3 (16-304)||(4157991-4158279)
chr3 (34-165)||(3745866-3745997)
chr3 (82-153)||(2686425-2686496)
chr3 (101-155)||(2678528-2678582)
chr3 (244-296)||(2678671-2678723)
chr3 (181-219)||(3745803-3745841)
chr3 (244-304)||(2686584-2686644)
chr3 (259-299)||(23235146-23235186)
[»] chr5 (1 HSPs)
chr5 (30-278)||(11081555-11081803)
[»] chr7 (1 HSPs)
chr7 (39-163)||(1078245-1078369)
[»] chr4 (1 HSPs)
chr4 (244-299)||(20020041-20020096)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 4142181 - 4142469
Alignment:
Q  16 acatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142181 acatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatct 4142280  T
Q  116 tttgataagactccattgccaaatcaaatgaaacaataaagcgtggacattccgacgattcttcggagaacaaccaattaattgtgccactcacaaattc 215  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  4142281 tttgataagactcctttgccaaatcaaaagaaacaataaagcatggacattccaatgattcttcggagaacaaccaattaattgtgccactcacaaattc 4142380  T
Q  216 ccccttcttaactggaacaggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattactt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142381 ccccttcttaactggaacaggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattactt 4142469  T

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Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 34 - 304
Target Start/End: Complemental strand, 3754589 - 3754319
Alignment:
Q  34 gtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactccattg 133  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  3754589 gtcacgcacaagcaatccctcaaaacactcaaagccgacatgtcacacacatccacccctcccaaattaggaggtgaaatcttttgatatgactcctttg 3754490  T
Q  134 ccaaatcaaatgaaacaataaagcgtggacattccgacgattcttcggagaacaaccaattaattgtgccactcacaaattcccccttcttaactggaac 233  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3754489 ccaaatcaaaagaaacaataaagcgtggacattccgatgattcttcggacaacaaccaattaattgtgccactcacaaattcccccttcataactggaac 3754390  T
Q  234 aggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattactt 304  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  3754389 aggaagacctccaaaaggatagtcctggatggttctccatatattagtacccaaagtatgaacctttactt 3754319  T

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Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 4157991 - 4158279
Alignment:
Q  16 acatcatagccagaagtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatct 115  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  4157991 acatcataaccagaagtggtcacgcacaagcaatccctcaaaacacccaaagccgacaagtcacacacatccacccctcccaaattaggaggtgaaatct 4158090  T
Q  116 tttgataagactccattgccaaatcaaatgaaacaataaagcgtggacattcc---gacgattcttcggagaacaaccaattaattgtgccactcacaaa 212  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||| |||||    ||   ||||  ||||||||||||||||| || |||||||||||    
T  4158091 tttgataagactcctttgccaaatcaaatgaaacaataaagcatggatattcccagaactgctctttagagaacaaccaattaatcgtaccactcacaaa 4158190  T
Q  213 ttcccccttcttaactggaacaggaagacctccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattactt 304  Q
    ||||||||||   |  ||||||  |||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  4158191 ttcccccttc---atgggaacaataagaccgccaaaatgatagtcctgaatggttctccaaatattagtacccaaagtatgaacctttactt 4158279  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 3745997 - 3745866
Alignment:
Q  34 gtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactccattg 133  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||  ||||| | |||||| | | |||||||||||||||||||| ||| |||| |||    
T  3745997 gtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctatccctccaatactaggaggtgaaatcttttgaaaagtctcctttg 3745898  T
Q  134 ccaaatcaaatgaaacaataaagcgtggacat 165  Q
    |||||||||| ||||||||||||| |||||||    
T  3745897 ccaaatcaaaagaaacaataaagcatggacat 3745866  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 2686425 - 2686496
Alignment:
Q  82 acatccacccctcccaaattaggaggtgaaatcttttgataagactccattgccaaatcaaatgaaacaata 153  Q
    ||||| ||||||||  || ||||||| || |||||||||||||||||  ||||||||||||| |||||||||    
T  2686425 acatctacccctccataactaggaggggatatcttttgataagactcttttgccaaatcaaaagaaacaata 2686496  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 2678528 - 2678582
Alignment:
Q  101 taggaggtgaaatcttttgataagactccattgccaaatcaaatgaaacaataaa 155  Q
    |||||||||| | |||||||||||||||  ||||||||||||| |||||||||||    
T  2678528 taggaggtgatagcttttgataagactcttttgccaaatcaaaagaaacaataaa 2678582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 2678671 - 2678723
Alignment:
Q  244 ccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaac 296  Q
    ||||||||| |||| |||||| ||||||| ||||||| |||||||||||||||    
T  2678671 ccaaaaggaaactcttgaatgtttctccaaatattagaacccaaagtatgaac 2678723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 3745841 - 3745803
Alignment:
Q  181 gagaacaaccaattaattgtgccactcacaaattccccc 219  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  3745841 gagaacaaccaattaatagtgccactcacaaatttcccc 3745803  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 2686584 - 2686644
Alignment:
Q  244 ccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccattactt 304  Q
    ||||||||| |||| || ||| || |||| ||||||| |||||||||||||||| ||||||    
T  2686584 ccaaaaggaaactcatggatgtttttccaaatattagaacccaaagtatgaacctttactt 2686644  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 23235146 - 23235186
Alignment:
Q  259 tgaatggttctccatatattagtacccaaagtatgaaccat 299  Q
    ||||| |||||||||  ||||||||||||||||||||||||    
T  23235146 tgaattgttctccatgaattagtacccaaagtatgaaccat 23235186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 11081803 - 11081555
Alignment:
Q  30 agtcgtcacgcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactcc 129  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  11081803 agtcgtcacacacaagcaatccctcaaaacacccaaagccgacaagttacgcacatccaccccttccaaattaggaggtgaaatcttttgataagactcc 11081704  T
Q  130 attgccaaatcaaatgaaacaataaagcgtggacattccgacgattcttcggagaacaacc-aattaattgtgccactcacaaattcccccttcttaact 228  Q
     |||||||||| ||  ||||||||||||||||||||||| |  |  | |  |||||||||| ||||||||| |||||||||||||||||| ||| ||||     
T  11081703 tttgccaaatcgaaacaaacaataaagcgtggacattcccaaca-ccattagagaacaaccaaattaattgcgccactcacaaattcccctttcataacg 11081605  T
Q  229 ggaacaggaagacctccaaaaggatactcctgaatggttctccatatatt 278  Q
    ||||||  |||||| |||||| |||| ||||||||||||||||| |||||    
T  11081604 ggaacaataagaccgccaaaaagataatcctgaatggttctccaaatatt 11081555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 1078245 - 1078369
Alignment:
Q  39 gcacaagcaatccctcaaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactccattgccaaa 138  Q
    |||||||||||||||||| ||||||||  |  | |||| ||  ||||| ||||||||  ||| ||||||  ||| |||||||||||| ||  || |||||    
T  1078245 gcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctccataatcaggaggcaaaaccttttgataagattcttttcccaaa 1078344  T
Q  139 tcaaatgaaacaataaagcgtggac 163  Q
    ||||| |||||||||||||| ||||    
T  1078345 tcaaaagaaacaataaagcgaggac 1078369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 20020041 - 20020096
Alignment:
Q  244 ccaaaaggatactcctgaatggttctccatatattagtacccaaagtatgaaccat 299  Q
    ||||||||| ||||||||||| || |||| | |||||||||||| |||||||||||    
T  20020041 ccaaaaggacactcctgaatgcttttccaaaaattagtacccaaggtatgaaccat 20020096  T

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