View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8539_low_7 (Length: 240)
Name: NF8539_low_7
Description: NF8539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8539_low_7 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4142545 - 4142767
Alignment:
| Q |
1 |
ttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142545 |
ttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtcgtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttcca |
4142644 |
T |
|
| Q |
101 |
acatataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatgaagcgataaaacttggcataaggccaatcagattgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142645 |
acatataactaagcttgtatattcgttgtctgcaagacacacaatgccgttgcaagagccaatgaagcgataaaacttggcataaggccaatcagattgt |
4142744 |
T |
|
| Q |
201 |
gtgaagttagaggttatgtctgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4142745 |
gtgaagttagaggttatgtctgt |
4142767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4158355 - 4158577
Alignment:
| Q |
1 |
ttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4158355 |
ttgaagaatcatagccaaagccaaacgtcatgacatttacaccagtcatgggcttttcaaaaaggggcaactccttgaattttcttgttgaagggttcca |
4158454 |
T |
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| Q |
101 |
acatataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatgaagcgataaaacttggcataaggccaatcagattgt |
200 |
Q |
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| T |
4158455 |
acatataactaagcttgtatattcgttgtctgcaatacacacaatgccgttgcaagaaccaatgaagcgataaaacttggcataaggccaatcagattgt |
4158554 |
T |
|
| Q |
201 |
gtgaagttagaggttatgtctgt |
223 |
Q |
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|||||||||||| |||||||||| |
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| T |
4158555 |
gtgaagttagagtttatgtctgt |
4158577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 3754240 - 3754085
Alignment:
| Q |
4 |
aagaatcatagccaaagccaaacgtcatgacatttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaaca |
103 |
Q |
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|||||||||||||||||||||||||||||| | | ||||| | | ||||||| |||||||||||| ||||| |||| |||||||||||||||| | |
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| T |
3754240 |
aagaatcatagccaaagccaaacgtcatgagagtaggaccattcga---cttttcataaaggggcaactgcttgattttttttgtggaagggttccacaa |
3754144 |
T |
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| Q |
104 |
tataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatga |
165 |
Q |
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| T |
3754143 |
tataactaagccgtta---tgattgtctgcaatacacacaatgccgttgcaagagccaatga |
3754085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 2686776 - 2686839
Alignment:
| Q |
51 |
ggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagc |
114 |
Q |
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| T |
2686776 |
ggcttttcaaaaaggggcaactctttaaattttcgtaaagaagggttccacaatataactaagc |
2686839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 12132668 - 12132625
Alignment:
| Q |
55 |
tttcaaaaaggggcaactccttgaattttcttgtggaagggttc |
98 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
12132668 |
tttcaagaaggggcaactccttgaattttctaatggaagggttc |
12132625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 3745592 - 3745558
Alignment:
| Q |
51 |
ggcttttcaaaaaggggcaactccttgaattttct |
85 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
3745592 |
ggcttttgaaaaaggggcaactccttgaattttct |
3745558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 1078655 - 1078714
Alignment:
| Q |
55 |
tttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagc |
114 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
1078655 |
tttcaagaaggggcaactccttgaattttctaatggaagggttcaacaatataactaagc |
1078714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 2067534 - 2067604
Alignment:
| Q |
51 |
ggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagcttgtata |
121 |
Q |
| |
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|||||||||||||| ||||||||||||| | |||| | |||||||| || |||||||||||| |||||| |
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| T |
2067534 |
ggcttttcaaaaagtggcaactccttgattgttctaatagaagggttacacaatataactaagcctgtata |
2067604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 41973942 - 41973978
Alignment:
| Q |
64 |
ggggcaactccttgaattttcttgtggaagggttcca |
100 |
Q |
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||||||| |||||||||||||| |||||||||||||| |
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| T |
41973942 |
ggggcaattccttgaattttctagtggaagggttcca |
41973978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1250 - 1286
Alignment:
| Q |
64 |
ggggcaactccttgaattttcttgtggaagggttcca |
100 |
Q |
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||||||| |||||||||||||| |||||||||||||| |
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| T |
1250 |
ggggcaattccttgaattttctagtggaagggttcca |
1286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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