View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8540_high_11 (Length: 366)

Name: NF8540_high_11
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8540_high_11
NF8540_high_11
[»] chr4 (6 HSPs)
chr4 (116-355)||(45476161-45476401)
chr4 (47-100)||(6607407-6607460)
chr4 (49-93)||(33380616-33380661)
chr4 (44-99)||(30023639-30023695)
chr4 (53-98)||(54223654-54223700)
chr4 (34-93)||(36273057-36273117)
[»] chr3 (9 HSPs)
chr3 (35-100)||(31342100-31342165)
chr3 (45-100)||(20286997-20287052)
chr3 (45-99)||(29081693-29081748)
chr3 (36-98)||(32385358-32385421)
chr3 (39-71)||(5633181-5633213)
chr3 (60-100)||(11512480-11512520)
chr3 (35-71)||(22893891-22893927)
chr3 (45-92)||(22894000-22894048)
chr3 (35-98)||(48342786-48342850)
[»] chr1 (8 HSPs)
chr1 (35-100)||(15928073-15928138)
chr1 (35-98)||(10449447-10449511)
chr1 (35-100)||(50754817-50754891)
chr1 (63-100)||(9884934-9884971)
chr1 (35-99)||(28739304-28739377)
chr1 (35-71)||(28045450-28045486)
chr1 (52-95)||(28810058-28810102)
chr1 (35-71)||(44381908-44381944)
[»] chr6 (4 HSPs)
chr6 (34-100)||(16193822-16193889)
chr6 (34-71)||(11448188-11448225)
chr6 (35-93)||(369519-369578)
chr6 (35-71)||(2543735-2543771)
[»] chr2 (4 HSPs)
chr2 (35-100)||(7755429-7755494)
chr2 (34-71)||(12918664-12918701)
chr2 (34-71)||(39819194-39819231)
chr2 (45-92)||(7755345-7755393)
[»] scaffold1315 (1 HSPs)
scaffold1315 (45-99)||(1822-1877)
[»] scaffold1293 (1 HSPs)
scaffold1293 (45-99)||(194-249)
[»] chr5 (4 HSPs)
chr5 (34-84)||(896267-896318)
chr5 (63-100)||(29385313-29385350)
chr5 (35-98)||(12605650-12605714)
chr5 (35-71)||(41288005-41288041)
[»] chr8 (2 HSPs)
chr8 (45-89)||(33763467-33763512)
chr8 (35-71)||(16687512-16687548)
[»] chr7 (2 HSPs)
chr7 (60-100)||(17272792-17272832)
chr7 (35-71)||(29681904-29681940)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 116 - 355
Target Start/End: Original strand, 45476161 - 45476401
Alignment:
Q  116 atctcctcccaaatgcacttcagtagttaaaataattatgacgttataagaatctctaat-ctgacattaattctttttatacaaagacttgtannnnnn 214  Q
    ||||||||||  ||||| |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||          
T  45476161 atctcctcccgcatgcatttcagtagttaaaataattatgaccttataataatctctaatgctgacattaattctttttatataaagacttgtatttttt 45476260  T
Q  215 naggggtaattgttgggaaatatgaccgactatctattgaccacgtaaattcgtttgatccgtgcaatttttgcaactgaatttcttacatctactggta 314  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45476261 taggggtaattgttaggaaatatgaccgactatctattgaccacgtaaattcgtttgatccgtgcaatttttgcaactgaatttcttacatctactagta 45476360  T
Q  315 catgtttaccacctgaccgactgattcatccaatctttcat 355  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  45476361 catgtttaccacctgactgactgattcatccaatctttcat 45476401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 6607407 - 6607460
Alignment:
Q  47 ggtgacattgtggttggtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  6607407 ggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaac 6607460  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 33380616 - 33380661
Alignment:
Q  49 tgacattgtggttggtgatatt-gtcaaccacaatgttacaagtgt 93  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||    
T  33380616 tgacattgtggttggtgatattggtcaaccacaatgtaacaagtgt 33380661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 30023695 - 30023639
Alignment:
Q  44 ctgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtgtgcaaaa 99  Q
    ||||||||||||||||||||||| ||||  |||||||||||| |||||||| |||||    
T  30023695 ctgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtacaaaa 30023639  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 54223700 - 54223654
Alignment:
Q  53 attgtggttggtgatattg-tcaaccacaatgttacaagtgtgcaaa 98  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||||    
T  54223700 attgtggttggtaatattgatcaaccacaatgttacaagtgtacaaa 54223654  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 36273117 - 36273057
Alignment:
Q  34 cggataatacctgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtgt 93  Q
    ||||||| || |||||||||||||||| ||||||||||  |||||||||| | ||||||||    
T  36273117 cggataacacttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtgt 36273057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 31342165 - 31342100
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    ||||||||  |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaac 31342100  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 20287052 - 20286997
Alignment:
Q  45 tgggtgacattgtggttggtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  20287052 tgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaac 20286997  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 29081748 - 29081693
Alignment:
Q  45 tgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtgtgcaaaa 99  Q
    ||||||| |||||||||||||| |||| ||||||||||||| |||||||| |||||    
T  29081748 tgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtgtacaaaa 29081693  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 32385358 - 32385421
Alignment:
Q  36 gataatacctgggtgacattgtggttggtgatatt-gtcaaccacaatgttacaagtgtgcaaa 98  Q
    |||||||  |||||||||||||| ||||||| ||| |||||||||||||| |||||||| ||||    
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtgtacaaa 32385421  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  39 aatacctgggtgacattgtggttggtgatattg 71  Q
    ||||| |||||||||||||||||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 11512520 - 11512480
Alignment:
Q  60 ttggtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  11512520 ttggtgacattaccaaccacaatgttacaagtgtgcaaaac 11512480  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 22893891 - 22893927
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg 71  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  22893891 ggataatacttgggtgacattgtggttggtgacattg 22893927  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 22894048 - 22894000
Alignment:
Q  45 tgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtg 92  Q
    |||||||||||||||||||||| ||||  |||||||||||| |||||||    
T  22894048 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 22894000  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 48342786 - 48342850
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatatt-gtcaaccacaatgttacaagtgtgcaaa 98  Q
    ||||||||| ||||||||||| ||||||| || ||| |||||||||||||| |||| ||| ||||    
T  48342786 ggataatacttgggtgacattatggttggcgacattggtcaaccacaatgtcacaaatgtacaaa 48342850  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 15928073 - 15928138
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    ||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||||    
T  15928073 ggataatacttgggtgacattgtgattggtgacattatcaaccacaatgttacaagtgtacaaaac 15928138  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 10449447 - 10449511
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtgtgcaaa 98  Q
    ||||||||| |||||||||||||||||||||| ||||  |||||||||||| |||||||| ||||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtacaaa 10449511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 50754891 - 50754817
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg---------tcaaccacaatgttacaagtgtgcaaaac 100  Q
    ||||||||| |||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattggtgacattatcaaccacaatgttacaagtgtgcaaaac 50754817  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 9884971 - 9884934
Alignment:
Q  63 gtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  9884971 gtgacattatcaaccacaatgttacaagtgtgcaaaac 9884934  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 28739304 - 28739377
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg---------tcaaccacaatgttacaagtgtgcaaaa 99  Q
    ||||||||| ||||||| |||||||||||||||||||          |||||||||||||||||||||||||||    
T  28739304 ggataatacttgggtgatattgtggttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaa 28739377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 28045486 - 28045450
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg 71  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  28045486 ggataatacttgggtgacattgtggttggtgacattg 28045450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 28810102 - 28810058
Alignment:
Q  52 cattgtggttggtgatattg-tcaaccacaatgttacaagtgtgc 95  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcacaagtgtgc 28810058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 44381908 - 44381944
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg 71  Q
    ||||||||  |||||||||||||||||||||||||||    
T  44381908 ggataatatttgggtgacattgtggttggtgatattg 44381944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 16193889 - 16193822
Alignment:
Q  34 cggataatacctgggtgacattgtggttggtgatatt-gtcaaccacaatgttacaagtgtgcaaaac 100  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||    
T  16193889 cggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtgtacaaaac 16193822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 11448225 - 11448188
Alignment:
Q  34 cggataatacctgggtgacattgtggttggtgatattg 71  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11448225 cggataatacttgggtgacattgtggttggtgatattg 11448188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 369578 - 369519
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtgt 93  Q
    ||||||||| || ||||||||||||||||||| ||||  |||||||||||| ||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgt 369519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 2543735 - 2543771
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg 71  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  2543735 ggataatacttgggtgacattgtggttggtgacattg 2543771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 7755494 - 7755429
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    ||||||||  |||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||||    
T  7755494 ggataatatttgggtgacattgtggttggtgacattaccaatcacaatgttacaagtgtacaaaac 7755429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 12918701 - 12918664
Alignment:
Q  34 cggataatacctgggtgacattgtggttggtgatattg 71  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  12918701 cggataatacttgggtgacattgtggttggtgacattg 12918664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 39819231 - 39819194
Alignment:
Q  34 cggataatacctgggtgacattgtggttggtgatattg 71  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  39819231 cggataatacttgggtgacattgtggttggtgacattg 39819194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 7755345 - 7755393
Alignment:
Q  45 tgggtgacattgtggttggtgatatt-gtcaaccacaatgttacaagtg 92  Q
    |||||||||||||||||||||| ||| | |||||||||||| |||||||    
T  7755345 tgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtg 7755393  T

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Target: scaffold1315 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 1822 - 1877
Alignment:
Q  45 tgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtgtgcaaaa 99  Q
    |||||||||||||||||||||| |||| ||||||||||| | |||||||| |||||    
T  1822 tgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtgtacaaaa 1877  T

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Target: scaffold1293 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 249 - 194
Alignment:
Q  45 tgggtgacattgtggttggtgatattg-tcaaccacaatgttacaagtgtgcaaaa 99  Q
    |||||||||||||||||||||| |||| ||||||||||| | |||||||| |||||    
T  249 tgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtgtacaaaa 194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 896267 - 896318
Alignment:
Q  34 cggataatacctgggtgacattgtggttggtgatattg-tcaaccacaatgt 84  Q
    ||||||| || ||||||| ||||||||||||||||||| |||||||||||||    
T  896267 cggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgt 896318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 29385313 - 29385350
Alignment:
Q  63 gtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  29385313 gtgatattaccaaccacaatgttacaagtgtgcaaaac 29385350  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 12605714 - 12605650
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatatt-gtcaaccacaatgttacaagtgtgcaaa 98  Q
    ||||||||| |  ||||||||||||||||||| ||| |||||||||||||| ||| |||| ||||    
T  12605714 ggataatacttaagtgacattgtggttggtgacattggtcaaccacaatgtcacacgtgtacaaa 12605650  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 41288041 - 41288005
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg 71  Q
    ||||||||  |||||||||||||||||||||||||||    
T  41288041 ggataatatttgggtgacattgtggttggtgatattg 41288005  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 33763467 - 33763512
Alignment:
Q  45 tgggtgacattgtggttggtgatatt-gtcaaccacaatgttacaa 89  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||    
T  33763467 tgggtgacattgtggttggtgacattggtcaaccacaatattacaa 33763512  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 16687512 - 16687548
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg 71  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  16687512 ggataatacttggatgacattgtggttggtgatattg 16687548  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 17272832 - 17272792
Alignment:
Q  60 ttggtgatattgtcaaccacaatgttacaagtgtgcaaaac 100  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  17272832 ttggtgacattaccaaccacaatgttacaagtgtgcaaaac 17272792  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 29681940 - 29681904
Alignment:
Q  35 ggataatacctgggtgacattgtggttggtgatattg 71  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacattg 29681904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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