View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8540_high_17 (Length: 273)
Name: NF8540_high_17
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42445692 - 42445469
Alignment:
| Q |
1 |
gctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttcctatacccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42445692 |
gctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttcctatacccc |
42445593 |
T |
|
| Q |
101 |
ctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcctgcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42445592 |
ctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcctgcata |
42445493 |
T |
|
| Q |
201 |
tgctaagggcaacagtgttggaga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42445492 |
tgctaagggcaacagtgttggaga |
42445469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University