View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_high_19 (Length: 261)
Name: NF8540_high_19
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 49450992 - 49450765
Alignment:
| Q |
15 |
aagaaacacgggactatagaaaaaggaaagtatttgacatgcttgataaagaaaaagaatgggaagtttgatgaacatccatatgagtcagatgggtccc |
114 |
Q |
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| T |
49450992 |
aagaaactcgggactatagaaaaaggaaagtatttgacatgcttgataaagaaaaagaatgggaagtttgatgaacatccatatgagtcagatgggtccc |
49450893 |
T |
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| Q |
115 |
ctgtgtttgattctgatgagtcatcgaacgaatccacaacaagcggtggcagttccagtagtagtagcaatagccccacagagtcaagagttagttttcc |
214 |
Q |
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| T |
49450892 |
ctgtgtttgactctgatgagtcatcgaacgaatccacaacaagcggtggcagttccagtagtagtagcaatagccccacagagtcaagagttaattttcc |
49450793 |
T |
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| Q |
215 |
aagttcagggataaagacatgtttggat |
242 |
Q |
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| T |
49450792 |
aagttcagggataaagacaagtttggat |
49450765 |
T |
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