View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8540_high_2 (Length: 812)
Name: NF8540_high_2
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 301 - 795
Target Start/End: Complemental strand, 44694109 - 44693615
Alignment:
| Q |
301 |
gtctaaagaatttttcttggacgatcaataattatttttgaaaattagtaattacgtagttgttatagttcaccagagtttgaatctggtgtc-tccaac |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44694109 |
gtctaaagaatttttcttggacgatcaataattatttttgaaaattagtaattacgtagttgttatagttcaccagagtttgaatctggtgtcctccaac |
44694010 |
T |
|
| Q |
400 |
ttcctagacccttaacacaaatagttgagctacccaccccaaagataatttaatattatcacaagttcgctaatgactagaacttcctttgttcctgatc |
499 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694009 |
ttcctagtcccttaacacaaatagttgagctacccaccccaaagataatttaatattatcacaagttcgctaatgactagaacttcctttgttcctgatc |
44693910 |
T |
|
| Q |
500 |
gttggtctttgaaaatcggacacttagaaaaaatcaatttaaatagataatagactaatttacctctttttaattgcattttttacccttgttgtcctta |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44693909 |
gttggtctttgaaaatcggacacttagaaaaaatcaatttaaatagataatagactaatttacctctttttgattgcattttttacccttgttgtcctta |
44693810 |
T |
|
| Q |
600 |
ttcacaattttaatcttaaattttcataatgttcattacacttaaatcttaaatcataatattgannnnnnnnnnnnngaaacggctaatattattaagc |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44693809 |
ttcacaattttaatcttaaattttcataatgttcattacacttaaatcttaaatcataatattga-ttttttttttttgaaacggctaatattattaagc |
44693711 |
T |
|
| Q |
700 |
agagctagcacgagaagcactcagtccgcgaaaggaggaaaaagagtacaaaggatgcaaaacaactaaaagcactcaaactgcccaccactcgat |
795 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693710 |
agagctagcacgagaagcactcagcccgcgaaaggaggaaaaagagtacaaaggatgcaaaacaactaaaagcactcaaactgcccaccactcgat |
44693615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 44694402 - 44694141
Alignment:
| Q |
9 |
agaagcagagaggttagattttagaggctgcagtgacatgagaacgaccattagctcctagaaaaagatcaggtgaatgtgtatggctcttatcagtttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694402 |
agaagcagagaggttagattttagaggctgcagtgacatgagaacgaccattagctcctagaaaaagatcaggtgaatgtgtatggctcttatcagtttt |
44694303 |
T |
|
| Q |
109 |
atgttggcagtcattatcttcatcttcttcagcatcccataggaattttgcatatgaagccaagacatagctgatgtgataataatattaatttactaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694302 |
atgttggcagtcattatcttcatcttcttcagcatcccataggaattttgcatatgaagccaagacatagctgatgtgataataatattaatttactaat |
44694203 |
T |
|
| Q |
209 |
tagtttttatatattacattcaagaaaaatcaggacacaaacaaacccttgttatttgtttg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694202 |
tagtttttatatattacattcaagaaaaatcaggacacaaacaaacccttgttatttgtttg |
44694141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University