View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8540_high_21 (Length: 243)

Name: NF8540_high_21
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8540_high_21
NF8540_high_21
[»] chr8 (16 HSPs)
chr8 (1-188)||(36931603-36931790)
chr8 (193-229)||(39722325-39722361)
chr8 (198-232)||(34057834-34057868)
chr8 (198-235)||(12801470-12801507)
chr8 (196-229)||(30777275-30777308)
chr8 (195-235)||(463837-463877)
chr8 (196-232)||(2666872-2666908)
chr8 (196-232)||(34520938-34520974)
chr8 (198-229)||(2879936-2879967)
chr8 (198-229)||(5273420-5273451)
chr8 (196-235)||(32887669-32887708)
chr8 (196-235)||(38764741-38764780)
chr8 (196-229)||(12632907-12632940)
chr8 (196-229)||(28886052-28886085)
chr8 (199-235)||(12107490-12107526)
chr8 (199-235)||(35754465-35754501)
[»] chr6 (16 HSPs)
chr6 (188-235)||(10887804-10887851)
chr6 (191-235)||(1705970-1706014)
chr6 (196-235)||(14507985-14508024)
chr6 (198-235)||(6295742-6295779)
chr6 (198-235)||(6302552-6302589)
chr6 (192-235)||(1371760-1371803)
chr6 (192-235)||(1379508-1379551)
chr6 (196-235)||(2994325-2994364)
chr6 (196-235)||(10965988-10966027)
chr6 (196-235)||(19474036-19474075)
chr6 (196-235)||(21294154-21294193)
chr6 (196-235)||(24249170-24249209)
chr6 (197-235)||(7344325-7344363)
chr6 (198-232)||(14002403-14002437)
chr6 (199-229)||(21998984-21999014)
chr6 (198-232)||(24151129-24151163)
[»] chr1 (18 HSPs)
chr1 (196-235)||(38207532-38207571)
chr1 (186-235)||(7435878-7435927)
chr1 (199-234)||(10574700-10574735)
chr1 (196-229)||(49982459-49982492)
chr1 (198-229)||(17203117-17203148)
chr1 (196-235)||(23539945-23539984)
chr1 (196-235)||(32912214-32912253)
chr1 (196-235)||(40054952-40054991)
chr1 (198-229)||(40868139-40868170)
chr1 (196-235)||(43916349-43916388)
chr1 (197-235)||(26423845-26423883)
chr1 (198-232)||(39084715-39084749)
chr1 (198-232)||(50533909-50533943)
chr1 (198-231)||(5360207-5360240)
chr1 (197-229)||(26311386-26311418)
chr1 (191-235)||(29877700-29877744)
chr1 (197-229)||(44979244-44979276)
chr1 (199-235)||(51004796-51004832)
[»] chr3 (17 HSPs)
chr3 (191-229)||(47175839-47175877)
chr3 (190-235)||(35375508-35375553)
chr3 (196-235)||(43903437-43903476)
chr3 (197-235)||(52776453-52776491)
chr3 (197-229)||(4393517-4393549)
chr3 (191-235)||(14998145-14998189)
chr3 (197-228)||(24105154-24105185)
chr3 (24-107)||(25019813-25019896)
chr3 (196-235)||(29698325-29698364)
chr3 (196-235)||(48795442-48795481)
chr3 (194-236)||(13867061-13867103)
chr3 (191-229)||(29815499-29815537)
chr3 (196-229)||(15804633-15804666)
chr3 (192-229)||(51996418-51996455)
chr3 (193-229)||(5335363-5335399)
chr3 (197-229)||(15298216-15298248)
chr3 (205-237)||(35844839-35844871)
[»] chr7 (12 HSPs)
chr7 (196-235)||(29688927-29688966)
chr7 (189-232)||(43542147-43542190)
chr7 (198-235)||(27800033-27800070)
chr7 (193-229)||(8577924-8577960)
chr7 (198-229)||(19345982-19346013)
chr7 (196-235)||(21919691-21919730)
chr7 (190-229)||(38859605-38859644)
chr7 (198-229)||(45701036-45701067)
chr7 (195-229)||(41769288-41769322)
chr7 (196-229)||(2682796-2682829)
chr7 (200-229)||(45442422-45442451)
chr7 (196-228)||(8159641-8159673)
[»] chr5 (15 HSPs)
chr5 (196-235)||(5204620-5204659)
chr5 (196-243)||(23690504-23690551)
chr5 (196-235)||(40756544-40756583)
chr5 (193-235)||(5140669-5140711)
chr5 (190-235)||(5512679-5512724)
chr5 (191-235)||(31588599-31588643)
chr5 (196-235)||(4429784-4429823)
chr5 (198-229)||(9499772-9499803)
chr5 (197-228)||(19189479-19189510)
chr5 (196-235)||(34901660-34901699)
chr5 (196-235)||(39939036-39939075)
chr5 (198-232)||(19239161-19239195)
chr5 (196-229)||(39979714-39979747)
chr5 (197-229)||(23408623-23408655)
chr5 (199-235)||(40109897-40109933)
[»] chr4 (21 HSPs)
chr4 (196-235)||(4491220-4491259)
chr4 (190-232)||(3690880-3690922)
chr4 (196-236)||(12756366-12756406)
chr4 (191-235)||(15060919-15060963)
chr4 (197-229)||(18051778-18051810)
chr4 (191-235)||(32570732-32570776)
chr4 (196-235)||(19527088-19527127)
chr4 (196-235)||(27950261-27950300)
chr4 (196-231)||(34927105-34927140)
chr4 (196-235)||(39103540-39103579)
chr4 (197-236)||(52940844-52940883)
chr4 (197-235)||(25607694-25607732)
chr4 (198-232)||(25684098-25684132)
chr4 (193-235)||(31999090-31999131)
chr4 (190-235)||(31975914-31975959)
chr4 (196-229)||(34584185-34584218)
chr4 (198-235)||(49286693-49286730)
chr4 (199-235)||(595302-595338)
chr4 (191-227)||(4695680-4695716)
chr4 (197-229)||(9579668-9579700)
chr4 (197-229)||(9585363-9585395)
[»] chr2 (15 HSPs)
chr2 (196-235)||(5615748-5615787)
chr2 (196-235)||(12002709-12002748)
chr2 (188-235)||(38073101-38073148)
chr2 (197-229)||(8362405-8362437)
chr2 (196-235)||(2859362-2859401)
chr2 (196-235)||(8333894-8333933)
chr2 (196-235)||(15362472-15362511)
chr2 (196-235)||(41555434-41555473)
chr2 (196-235)||(45690502-45690541)
chr2 (197-235)||(12071518-12071556)
chr2 (196-229)||(11088596-11088629)
chr2 (196-229)||(25740357-25740390)
chr2 (196-229)||(37781869-37781902)
chr2 (189-229)||(11986181-11986221)
chr2 (196-232)||(40287709-40287745)
[»] scaffold0067 (1 HSPs)
scaffold0067 (199-232)||(41757-41790)
[»] scaffold0271 (1 HSPs)
scaffold0271 (186-229)||(17031-17074)
[»] scaffold0009 (1 HSPs)
scaffold0009 (191-223)||(214516-214548)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 36931790 - 36931603
Alignment:
Q  1 cactcaagtggttgtctatacatatatttattgagaaagtgcagaggatgtctaccctttcatgtagagtaaaaatggttctaccaactattttatgtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36931790 cactcaagtggttgtctatacatatatttattgagaaagtgtagaggatgtctaccctttcatgtagagtaaaaatggttctaccaactattttatgtat 36931691  T
Q  101 agtcataggtatcgatcgaacaatactctttcatgtaaagttgcaatgcttgtatcaactattttatgaatattcataacgtatcaaa 188  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36931690 agtcataggtatcgatcaaaccatactctttcatgtaaagttgcaatgcttgtatcaactattttatgaatattcataacgtatcaaa 36931603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 39722361 - 39722325
Alignment:
Q  193 ggaaacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||||||||||||    
T  39722361 ggaaacttctacggtacacctcataaattgaggtgta 39722325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 34057834 - 34057868
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||||||||||||||||||||||||||||||||||    
T  34057834 cttctacggtacacctcataaattgaggtgtatcg 34057868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 12801507 - 12801470
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||||||||||||||| |||||    
T  12801507 cttctacggtacacctcataaattgaggtgtaccggta 12801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 30777275 - 30777308
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||||    
T  30777275 aacttctacggtacacctcataaattgaggtgta 30777308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 463837 - 463877
Alignment:
Q  195 aaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  463837 aaacttttacggtacacttcataaattgaggtgtatcggta 463877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 2666908 - 2666872
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcg 232  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2666908 aacttctacggtacacctcataaattgagatgtatcg 2666872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 34520974 - 34520938
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||||||||||||||||||| ||||||||||||||||    
T  34520974 aacttctacggtacacctcacaaattgaggtgtatcg 34520938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Original strand, 2879936 - 2879967
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||    
T  2879936 cttctacggtacacctcataaattgaggtgta 2879967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 5273451 - 5273420
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||    
T  5273451 cttctacggtacacctcataaattgaggtgta 5273420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 32887669 - 32887708
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  32887669 aacttctacggtacatctcataaattgaggtgtaccggta 32887708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 38764741 - 38764780
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  38764741 aacttctacggtacaccttacaaattgaggtgtatcggta 38764780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 12632907 - 12632940
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||| |||||||||||||    
T  12632907 aacttctacggtacacctcacaaattgaggtgta 12632940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 28886085 - 28886052
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||| |||||||||||||    
T  28886085 aacttctacggtacacctcacaaattgaggtgta 28886052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 12107490 - 12107526
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||| |||||||||||||||||| |||||    
T  12107490 ttctacggtacatctcataaattgaggtgtaccggta 12107526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 35754465 - 35754501
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||| |||||||||| |||||||||||||    
T  35754465 ttctacggtacatctcataaattaaggtgtatcggta 35754501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 10887804 - 10887851
Alignment:
Q  188 attatggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  10887804 attatgggaacttctacggtacacctcataaattgaggtgtaccggta 10887851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 1706014 - 1705970
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  1706014 atgggaacttctacggtacacctcataaattgaggtgtaccggta 1705970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 14508024 - 14507985
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  14508024 aacttctacggtacacctcataaattgaggtgtaccggta 14507985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 6295779 - 6295742
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||| |||||||||||||||||||    
T  6295779 cttctacggtacacctcacaaattgaggtgtatcggta 6295742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 6302589 - 6302552
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||| |||||||||||||||||||    
T  6302589 cttctacggtacacctcacaaattgaggtgtatcggta 6302552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 1371803 - 1371760
Alignment:
Q  192 tggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||| || |||||| |||||||||||||||||||    
T  1371803 tggaaacttctacgatatacctcacaaattgaggtgtatcggta 1371760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 1379551 - 1379508
Alignment:
Q  192 tggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||| || |||||| |||||||||||||||||||    
T  1379551 tggaaacttctacgatatacctcacaaattgaggtgtatcggta 1379508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 2994325 - 2994364
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  2994325 aacttctacagtacacctcataaattgaggtgtaccggta 2994364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 10966027 - 10965988
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  10966027 aacttctacggtacacctcacaaattgaggtgtaccggta 10965988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 19474075 - 19474036
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  19474075 aacttctacggtacacctcacaaattgaggtgtaccggta 19474036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 21294193 - 21294154
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  21294193 aactcctacggtacacctcataaattgaggtgtaccggta 21294154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 24249209 - 24249170
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  24249209 aacttctacggtacaccttacaaattgaggtgtatcggta 24249170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 7344325 - 7344363
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  7344325 acttctacggtacaccacataaattgaggtgtaccggta 7344363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 14002403 - 14002437
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||||||||||||||||| ||||||||||||||||    
T  14002403 cttctacggtacacctcagaaattgaggtgtatcg 14002437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 21999014 - 21998984
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||||||    
T  21999014 ttctacggtacacctcataaattgaggtgta 21998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 24151129 - 24151163
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||||||||||||||||| ||||||||||||||||    
T  24151129 cttctacggtacacctcacaaattgaggtgtatcg 24151163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 38207532 - 38207571
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38207532 aacttctacggtacacctcataaattgaggtgtatcggta 38207571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 7435927 - 7435878
Alignment:
Q  186 aaattatggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||| || |||||||||||||||||||| |||||||||||||||||||    
T  7435927 aaattaagggaacttctacggtacacctcacaaattgaggtgtatcggta 7435878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 10574735 - 10574700
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgtatcggt 234  Q
    ||||||||||||||||||||||||||||||||||||    
T  10574735 ttctacggtacacctcataaattgaggtgtatcggt 10574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 49982459 - 49982492
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||||    
T  49982459 aacttctacggtacacctcataaattgaggtgta 49982492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 17203148 - 17203117
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||    
T  17203148 cttctacggtacacctcataaattgaggtgta 17203117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 23539945 - 23539984
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  23539945 aacttctacggtacacctcagaaattgaggtgtaccggta 23539984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 32912214 - 32912253
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  32912214 aacttctacagtacacctcacaaattgaggtgtatcggta 32912253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 40054991 - 40054952
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  40054991 aacttctacggtacacctcacaaattgaggtgtaccggta 40054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Original strand, 40868139 - 40868170
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||    
T  40868139 cttctacggtacacctcataaattgaggtgta 40868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 43916349 - 43916388
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  43916349 aacttctacggtacacctcacaaattgaggtgtaccggta 43916388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 26423845 - 26423883
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  26423845 acttctacggtacacctcataaattaaggtgtaccggta 26423883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 39084715 - 39084749
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||||||||||||||||| ||||||||||||||||    
T  39084715 cttctacggtacacctcacaaattgaggtgtatcg 39084749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 50533909 - 50533943
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||||||||||||||||| ||||||||||||||||    
T  50533909 cttctacggtacacctcacaaattgaggtgtatcg 50533943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 5360207 - 5360240
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatc 231  Q
    |||||||||||||||||| |||||||||||||||    
T  5360207 cttctacggtacacctcacaaattgaggtgtatc 5360240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 26311386 - 26311418
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    ||||||| |||||||||||||||||||||||||    
T  26311386 acttctatggtacacctcataaattgaggtgta 26311418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 29877700 - 29877744
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||| ||||||||||||||||||||||||||  |||||| |||||    
T  29877700 atgggaacttctacggtacacctcataaatttgggtgtaccggta 29877744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 44979276 - 44979244
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||| |||||||    
T  44979276 acttctacggtacacctcataaattaaggtgta 44979244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 51004796 - 51004832
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  51004796 ttctacggtacacctcacaaattgaggtgtaccggta 51004832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 47175877 - 47175839
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47175877 atggaaacttctacggtacacctcataaattgaggtgta 47175839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 35375508 - 35375553
Alignment:
Q  190 tatggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||    
T  35375508 tatgggaacttctacggtacacctcacaaattgaggtgtatcggta 35375553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 43903476 - 43903437
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  43903476 aacttctacggtacacctcacaaattgaggtgtatcggta 43903437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 52776453 - 52776491
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  52776453 acttctacggtacacctcataaattgaggtgtaccggta 52776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 4393549 - 4393517
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||||||||    
T  4393549 acttctacggtacacctcataaattgaggtgta 4393517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 14998145 - 14998189
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||    
T  14998145 atgggaacttctacggtacacctcacaaattgtggtgtatcggta 14998189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 24105154 - 24105185
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgt 228  Q
    ||||||||||||||||||||||||||||||||    
T  24105154 acttctacggtacacctcataaattgaggtgt 24105185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 25019813 - 25019896
Alignment:
Q  24 atatttattgagaaagtgcagaggatgtctaccctttcatgtagagtaaaaatggttctaccaactattttatgtatagtcata 107  Q
    |||||||| ||||||||| |||||    |||||||||||||||| || | |||||||||||||| | ||| ||| |||||||||    
T  25019813 atatttatagagaaagtggagaggggacctaccctttcatgtagggttacaatggttctaccaattctttcatgaatagtcata 25019896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 29698325 - 29698364
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  29698325 aacttctacggtacacctcacaaattgaggtgtaccggta 29698364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 48795442 - 48795481
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  48795442 aacttctacggtacacctcacaaattgaggtgtaccggta 48795481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 13867061 - 13867103
Alignment:
Q  194 gaaacttctacggtacacctcataaattgaggtgtatcggtat 236  Q
    |||||||||||||||||||||| |||||||| ||||| |||||    
T  13867061 gaaacttctacggtacacctcacaaattgagctgtattggtat 13867103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 29815537 - 29815499
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgta 229  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  29815537 atgggaacttctacggtacacctcacaaattgaggtgta 29815499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 15804666 - 15804633
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||| ||||||||||||    
T  15804666 aacttctacggtacacctcatcaattgaggtgta 15804633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 51996418 - 51996455
Alignment:
Q  192 tggaaacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  51996418 tggaaacttctacggtacacatcacaaattgaggtgta 51996455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 5335363 - 5335399
Alignment:
Q  193 ggaaacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||| |||| |||||||||||||    
T  5335363 ggaaacttctacggtacatctcacaaattgaggtgta 5335399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 15298216 - 15298248
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    |||||||| ||||||||||||||||||||||||    
T  15298216 acttctactgtacacctcataaattgaggtgta 15298248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 35844839 - 35844871
Alignment:
Q  205 ggtacacctcataaattgaggtgtatcggtatc 237  Q
    ||||||||||| |||||||||||||||||||||    
T  35844839 ggtacacctcacaaattgaggtgtatcggtatc 35844871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 29688927 - 29688966
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  29688927 aacttctacggtacacctcataaattgaggtgtaccggta 29688966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 43542190 - 43542147
Alignment:
Q  189 ttatggaaacttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  43542190 ttatagaaacttctacggtacacctcataaattgaggtgcatcg 43542147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 27800033 - 27800070
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||||||||||||||| |||||    
T  27800033 cttctacggtacacctcataaattgaggtgtaccggta 27800070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 8577924 - 8577960
Alignment:
Q  193 ggaaacttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||| |||||||||||||||||||||||||    
T  8577924 ggaaacttctatggtacacctcataaattgaggtgta 8577960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 19346013 - 19345982
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||    
T  19346013 cttctacggtacacctcataaattgaggtgta 19345982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 21919691 - 21919730
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  21919691 aacttctacggtacacctcacaaattgaggtgtaccggta 21919730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 38859644 - 38859605
Alignment:
Q  190 tatggaaacttctacggtacacctcataaattgaggtgta 229  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  38859644 tatggagacttctacggtacaccttataaattgaggtgta 38859605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Original strand, 45701036 - 45701067
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||    
T  45701036 cttctacggtacacctcataaattgaggtgta 45701067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 41769288 - 41769322
Alignment:
Q  195 aaacttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||| |||||||||||||||||||||||    
T  41769288 aaacttctacgatacacctcataaattgaggtgta 41769322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 2682796 - 2682829
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    ||||| ||||||||||||||||||||||||||||    
T  2682796 aacttatacggtacacctcataaattgaggtgta 2682829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 45442451 - 45442422
Alignment:
Q  200 tctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||    
T  45442451 tctacggtacacctcataaattgaggtgta 45442422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 8159641 - 8159673
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgt 228  Q
    |||||||||||||||||||||||||||| ||||    
T  8159641 aacttctacggtacacctcataaattgaagtgt 8159673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 5204620 - 5204659
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5204620 aacttctacggtacacctcacaaattgaggtgtatcggta 5204659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 23690504 - 23690551
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggtatctctgct 243  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  23690504 aacttctacggtacacctcaaaaattgaggtgtaccggtatttctgct 23690551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 40756544 - 40756583
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  40756544 aacttctacggtacacctcacaaattgaggtgtatcggta 40756583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 5140669 - 5140711
Alignment:
Q  193 ggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  5140669 ggaaacttctacggtacacctcacaaattgaggtgtaccggta 5140711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 5512679 - 5512724
Alignment:
Q  190 tatggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||    
T  5512679 tatgggaacttctacggtacacctcacaaattgaggtgtaccggta 5512724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 31588643 - 31588599
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||    
T  31588643 atgggaacttctacggtacacctcacaaattgaggtgtaccggta 31588599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 4429823 - 4429784
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  4429823 aacttctacggtacacctcacaaattgaggtgtattggta 4429784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 9499803 - 9499772
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||||||||||||||||||||    
T  9499803 cttctacggtacacctcataaattgaggtgta 9499772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 19189510 - 19189479
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgt 228  Q
    ||||||||||||||||||||||||||||||||    
T  19189510 acttctacggtacacctcataaattgaggtgt 19189479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 34901660 - 34901699
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  34901660 aacttctacggtacacctcataaattggggtgtaccggta 34901699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 39939036 - 39939075
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  39939036 aacttctacggtacacctcacaaattgaggtgtaccggta 39939075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 19239195 - 19239161
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcg 232  Q
    |||||| ||||||||||||||||||||||||||||    
T  19239195 cttctatggtacacctcataaattgaggtgtatcg 19239161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 39979747 - 39979714
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||| |||||||||||||    
T  39979747 aacttctacggtacacctcacaaattgaggtgta 39979714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 23408655 - 23408623
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||||| |||||||||||||||||    
T  23408655 acttctacggtacacttcataaattgaggtgta 23408623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 40109897 - 40109933
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  40109897 ttctacggtacaccttataaattggggtgtatcggta 40109933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 4491259 - 4491220
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  4491259 aacttctacggtacacctcataaattgaggtgtaccggta 4491220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 3690922 - 3690880
Alignment:
Q  190 tatggaaacttctacggtacacctcataaattgaggtgtatcg 232  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  3690922 tatgggaacttctacggtacacctcacaaattgaggtgtatcg 3690880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 12756406 - 12756366
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggtat 236  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  12756406 aacttctacggtacacctcacaaattgaggtgtaccggtat 12756366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 15060963 - 15060919
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||    
T  15060963 atgggaacttctacggtacatctcataaattgaggtgcatcggta 15060919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 18051778 - 18051810
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||||||||    
T  18051778 acttctacggtacacctcataaattgaggtgta 18051810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 32570776 - 32570732
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||    
T  32570776 atgggaacttctacggtacacctcacaaattgaggtgtaccggta 32570732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 19527127 - 19527088
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  19527127 aacttctacggtacacctcacaaattgaggtgtaccggta 19527088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 27950261 - 27950300
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  27950261 aacttctacggtacacctcacaaattgaggtgtaccggta 27950300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 34927105 - 34927140
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatc 231  Q
    |||||||||||||||||||| |||||||||||||||    
T  34927105 aacttctacggtacacctcacaaattgaggtgtatc 34927140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 39103540 - 39103579
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  39103540 aacttctacggtacacctcacaaattgaggtgtaccggta 39103579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 52940883 - 52940844
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgtatcggtat 236  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  52940883 acttctacggtacaccacataaattgaggtgtaccggtat 52940844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 25607694 - 25607732
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  25607694 acttctacggtacacctcacaaattgaggtgtaccggta 25607732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 25684098 - 25684132
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcg 232  Q
    ||||||||||||||||||||||||||| |||||||    
T  25684098 cttctacggtacacctcataaattgagatgtatcg 25684132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 31999131 - 31999090
Alignment:
Q  193 ggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  31999131 ggaaacttctacggtacac-tcataaagtgaggtgtatcggta 31999090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 31975959 - 31975914
Alignment:
Q  190 tatggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||| ||||||||||||| |||||| |||||||||| ||||||||    
T  31975959 tatgggaacttctacggtagacctcacaaattgaggtctatcggta 31975914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 34584185 - 34584218
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||| |||||||||||||    
T  34584185 aacttctacggtacacctcacaaattgaggtgta 34584218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 49286693 - 49286730
Alignment:
Q  198 cttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  49286693 cttctacggtacacctcacaaattgaggtgtaccggta 49286730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 595302 - 595338
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  595302 ttctacggtacacctcacaaattgaggtgtaccggta 595338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 4695716 - 4695680
Alignment:
Q  191 atggaaacttctacggtacacctcataaattgaggtg 227  Q
    |||| |||||||| |||||||||||||||||||||||    
T  4695716 atgggaacttctagggtacacctcataaattgaggtg 4695680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 9579668 - 9579700
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||| ||||    
T  9579668 acttctacggtacacctcataaattgagttgta 9579700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 9585363 - 9585395
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||| ||||    
T  9585363 acttctacggtacacctcataaattgagttgta 9585395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 5615787 - 5615748
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  5615787 aacttctacgatacacctcataaattgaggtgtatcggta 5615748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 12002748 - 12002709
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  12002748 aacttctacggtacacctcacaaattgaggtgtatcggta 12002709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 38073101 - 38073148
Alignment:
Q  188 attatggaaacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||||    
T  38073101 attatgggaacttctacggtacacctcacaaattgaggtgtaccggta 38073148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 8362405 - 8362437
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||||||||||||||||    
T  8362405 acttctacggtacacctcataaattgaggtgta 8362437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 2859362 - 2859401
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  2859362 aacttctacggtacatctcataaattgaggtgtaccggta 2859401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 8333894 - 8333933
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  8333894 aacttctacggtacacctcacaaattgaggtgtaccggta 8333933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 15362472 - 15362511
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  15362472 aacttctacggtacaccttataaattgaggtgtaccggta 15362511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 41555434 - 41555473
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  41555434 aacttctacggtacacctcacaaattgaggtgtaccggta 41555473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 45690502 - 45690541
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcggta 235  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  45690502 aacttctacggtacacctcacaaattgaggtgtaccggta 45690541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 12071556 - 12071518
Alignment:
Q  197 acttctacggtacacctcataaattgaggtgtatcggta 235  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  12071556 acttctacgttacacctcataaattgaggtgtaccggta 12071518  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 11088629 - 11088596
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||| |||||||||||||    
T  11088629 aacttctacggtacacctcacaaattgaggtgta 11088596  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 25740390 - 25740357
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    ||||||||||||| ||||||||||||||||||||    
T  25740390 aacttctacggtatacctcataaattgaggtgta 25740357  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 37781869 - 37781902
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgta 229  Q
    |||||||||||||||||||| |||||||||||||    
T  37781869 aacttctacggtacacctcacaaattgaggtgta 37781902  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 11986181 - 11986221
Alignment:
Q  189 ttatggaaacttctacggtacacctcataaattgaggtgta 229  Q
    |||||| | |||||||||||||||||| |||||||||||||    
T  11986181 ttatgggagcttctacggtacacctcacaaattgaggtgta 11986221  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 40287709 - 40287745
Alignment:
Q  196 aacttctacggtacacctcataaattgaggtgtatcg 232  Q
    ||||||||  |||||||||||||||||||||||||||    
T  40287709 aacttctattgtacacctcataaattgaggtgtatcg 40287745  T

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Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 41790 - 41757
Alignment:
Q  199 ttctacggtacacctcataaattgaggtgtatcg 232  Q
    ||||||||||||||||||||||||||||||||||    
T  41790 ttctacggtacacctcataaattgaggtgtatcg 41757  T

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Target: scaffold0271 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 17074 - 17031
Alignment:
Q  186 aaattatggaaacttctacggtacacctcataaattgaggtgta 229  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||    
T  17074 aaattttgggaacttctacggtacacctcacaaattgaggtgta 17031  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 214548 - 214516
Alignment:
Q  191 atggaaacttctacggtacacctcataaattga 223  Q
    |||| ||||||||||||||||||||||||||||    
T  214548 atgggaacttctacggtacacctcataaattga 214516  T

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