View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8540_high_3 (Length: 663)

Name: NF8540_high_3
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8540_high_3
NF8540_high_3
[»] chr5 (1 HSPs)
chr5 (19-653)||(19418784-19419418)


Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 19 - 653
Target Start/End: Complemental strand, 19419418 - 19418784
Alignment:
Q  19 tcagcttcctcgtccttccggagcaagttgtttttcatcaagaaaaatctccggcgacggcggttttggatcgaaacggttaatcacggattcgtcaacg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19419418 tcagcttcctcgtccttccggagcaagttgtttttcatcaagaaaaatctccggcgacggcggttttggatcgaaacggttaatcacggattcgtcaacg 19419319  T
Q  119 tttccattcaaggaagctagcggtgttttgagatcgagaggttgttcagttatggcggcggttctttattttcagttttttggtctggaagaacgccctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| | |||||| ||||||||||||    
T  19419318 tttccattcaaggaagctagcggtgttttgagatcgagaggttgttcagttatggcggcgtttcttgatttacagtttctaggtctgaaagaacgccctg 19419219  T
Q  219 atcagttaaccgtttttgcgccgatcgacgaagctatggtgagtcacgtcggaaacgtgacagaatattccgatatacttcgccgtcatctcgtgccgtg 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19419218 atcagttaaccgttttcgcgccgatcgacgaagctatggtgagtcacgtcggaaacgtgacggaatattccgatatacttcgccgtcatctcgtgccgtg 19419119  T
Q  319 taagattgtgtggaatgatttggttgtgttagaggaaggaacgttgatttggacttatcaaagagatttcacattgaatgtgaaaactagtgctggtagt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19419118 taagattgtgtggaatgatttggttgtgttagaggaaggaacgttgatttggacttatcaaagagatttcacattgaatgtgaaaactagtgctggtagt 19419019  T
Q  419 gatttgtttttgcttaataatggtgttcctgtggtttttccggatttgtatgtaagtgattggcttgttgttcatggaatcggagatattcttttggata 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19419018 gatttgtttttgcttaataatggtgttcctgtggtttttccggatttgtatgtcagtgattggcttgttgttcatggaatcggagatattcttttggata 19418919  T
Q  519 ctgttagatcagaagaagtttcagttcaggatgcagaatctactaaatttgagattgatcatcatcatcaccgtcaccgtgatcatcgtattcatgatcg 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19418918 ctgttagatcagaagaagtttcagttcaggatgcagaatctactacatttgagattgatcatcatcatcaccgtcaccgtgatcatcgtattcatgatcg 19418819  T
Q  619 tgcgtataatcctgctgaacattctcacttctctg 653  Q
    ||||||||||||||| |||||||||||||||||||    
T  19418818 tgcgtataatcctgcagaacattctcacttctctg 19418784  T

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