View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_high_5 (Length: 498)
Name: NF8540_high_5
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_high_5 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 42445675 - 42446160
Alignment:
| Q |
1 |
tggtttcagtctctcagctgatgtacatgtcctaccagcaacacatgtaagctatgctgctggactaaagatcaaggcctacataaattccacttcaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445675 |
tggtttcagtctctcagctgatgtacatgtcctaccagcaacacatgtaagctatgctgctggactaaagatcaaggcctacataaattccacttcaccg |
42445774 |
T |
|
| Q |
101 |
acagcaaccatttcgtttaagggaacgattatcgggaactccttagcgccatccgttgcatcattctcttcaagaggtcccaacttgccgagtcctggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445775 |
acagcaaccatttcgtttaagggaacgattatcgggaactccttagcgccatccgttgcatcattctcttcaagaggtcccaacttgccgagtcctggta |
42445874 |
T |
|
| Q |
201 |
tattgaaaccggatattataggaccaggcgtgaacatcctagcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacattat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445875 |
tattgaaaccggatattataggaccaggcgtgaacatcctggcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacattat |
42445974 |
T |
|
| Q |
301 |
gtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445975 |
gtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccata |
42446074 |
T |
|
| Q |
401 |
atgacttctgcagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
486 |
Q |
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| T |
42446075 |
atgacttctgcagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
42446160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 393
Target Start/End: Complemental strand, 3207962 - 3207862
Alignment:
| Q |
293 |
aacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaat |
392 |
Q |
| |
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||||| || ||||| || ||||||||||| || ||||||||||||||||| |||||| | |||| ||||||||| |||||||| ||||| || ||||||| |
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| T |
3207962 |
aacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaat |
3207863 |
T |
|
| Q |
393 |
c |
393 |
Q |
| |
|
| |
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|
| T |
3207862 |
c |
3207862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 3179002 - 3179090
Alignment:
| Q |
305 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
393 |
Q |
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||||| |||||||| || || ||||| ||||||||||| || ||| ||||||| ||||||||||||||||| ||||| || |||||||| |
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| T |
3179002 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3179090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 3239838 - 3239750
Alignment:
| Q |
305 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
393 |
Q |
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||||| |||||||| || || ||||| ||||||||||| || ||| ||||||| ||||||||||||||||| ||||| || |||||||| |
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| T |
3239838 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3239750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 3201955 - 3201888
Alignment:
| Q |
326 |
catcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
393 |
Q |
| |
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||||||||||||||||| |||||| | |||| ||| ||||| ||||||||||||||||| |||||||| |
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| T |
3201955 |
catcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatc |
3201888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 3225764 - 3225703
Alignment:
| Q |
332 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
393 |
Q |
| |
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||||| ||||| || ||| ||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
3225764 |
agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatc |
3225703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 5725736 - 5725700
Alignment:
| Q |
288 |
atttcaacattatgtcaggcacatcaatgtcatgccc |
324 |
Q |
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||||||||||||| ||||||||||| ||||||||||| |
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| T |
5725736 |
atttcaacattatctcaggcacatccatgtcatgccc |
5725700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 68159 - 68220
Alignment:
| Q |
288 |
atttcaacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttg |
349 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||| ||| | ||||| | ||||||||| |
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| T |
68159 |
atttcaacattatctcaggcacatccatgtcatgccctcatgtaagtggattagcggctttg |
68220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 18214753 - 18214797
Alignment:
| Q |
361 |
tcatcctgattggtcaccagcagccataaaatctgccataatgac |
405 |
Q |
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|||||||||||||||||| ||||| ||||||||||| || ||||| |
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| T |
18214753 |
tcatcctgattggtcacctgcagctataaaatctgctatcatgac |
18214797 |
T |
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