View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_high_6 (Length: 498)
Name: NF8540_high_6
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 46667288 - 46666798
Alignment:
| Q |
1 |
agttgcaatcctgtacgatatttttgcattgtgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667288 |
agttgcaatcctgtacgatatttttgcattgtgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaa |
46667189 |
T |
|
| Q |
101 |
atggagaaatattttcagttgagaaaagaagggaaaatgtttctttaattttgaagactataaatgaagtgtataatcttgattggtttactagtgcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46667188 |
atggagaaatattttcagttgagaaaagaagggaaaatgtttctttaattttgaagactataaatgaagtgtataatcttgattggttcactagtgcttc |
46667089 |
T |
|
| Q |
201 |
caagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttacgaatgtatcgtagaag---- |
296 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667088 |
caagaatgagtgctctgctgctattggctacaagtggatgcttaatcaggtaggtagagtatcctaacacctcaatttacgaatgtatcgtagaagttct |
46666989 |
T |
|
| Q |
297 |
-----aagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctatcaccaaacatatggttaattgaattgcatcacttaacga |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
46666988 |
taagtaagggtgtgtttattttttaagtagtatttgattttattgaattgagttgtgctattaccaaacatatggttaattgaattgcatcattttacga |
46666889 |
T |
|
| Q |
392 |
taaaatttatctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaaatagttgaatatttggagcaaaaac |
482 |
Q |
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| T |
46666888 |
taaaatttctctaactattgtcatatttttcaataaattaagggtttgatggatcatcataaagaaatagttgaatatttggagcaaaaac |
46666798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 44195520 - 44195436
Alignment:
| Q |
32 |
tgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttc |
116 |
Q |
| |
|
|||| ||||| |||| ||||||||| ||| ||| || ||||| ||||||||| |||| ||||||||||||||||||| ||||| |
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| T |
44195520 |
tgtcgatgcagagatttgggagtggatggcatgagacgtttttaaatagtcatcctaacataagctcaaatggagaaatcttttc |
44195436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 6116961 - 6117178
Alignment:
| Q |
34 |
tcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttcagttgagaaaagaaggg |
133 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| |||| || ||||| || |||||||| || |||||||||| |
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| T |
6116961 |
tcaatgcaaagatctgggagtgggtggtttgagacacttttgaatagtcacattaatataagttccaatggggagatattttctgtacccaaaagaaggg |
6117060 |
T |
|
| Q |
134 |
aaaatgtttctttaattttgaagactataaatgaagtgtataatcttgattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaa |
233 |
Q |
| |
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||||| |||| | |||||||||||| | || | ||||| |||||||||||||||||||||||||| |||||||||||| | ||| | || ||||| |
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| T |
6117061 |
aaaatatttcatcaattttgaagacacttgataaggtgtacaatcttgattggtttactagtgcttctaagaatgagtgcaactcagctgtgggtttcaa |
6117160 |
T |
|
| Q |
234 |
gtggatgcttaatcaggt |
251 |
Q |
| |
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|||||||||||||||||| |
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| T |
6117161 |
gtggatgcttaatcaggt |
6117178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 6521792 - 6522001
Alignment:
| Q |
43 |
agatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttcagttgaga-aaagaagggaaaatgtt |
141 |
Q |
| |
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|||||||| ||||| |||||||| || ||||||||||||| ||||| |||||||| || || || |||||||| ||| ||| |||||||| |||||| | |
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| T |
6521792 |
agatctggcagtgggtggtttgagacccttttgaatagtcacattaatgtaagctcgaacggcgagatattttctgtt-agagaaagaaggcaaaatgct |
6521890 |
T |
|
| Q |
142 |
tctttaattttgaagactataaatgaagtgtataatcttgattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgc |
241 |
Q |
| |
|
|||| ||||||| ||||| || || ||| || ||| | || ||| | | ||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
6521891 |
tcttcaattttgcagactttagatagagtatacaatttggactggctcagtagtgcttccaagaatgagtgttctgccgcaattggcttcaagtggatgc |
6521990 |
T |
|
| Q |
242 |
ttaatcaggta |
252 |
Q |
| |
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||||||||||| |
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| T |
6521991 |
ttaatcaggta |
6522001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 33930286 - 33930366
Alignment:
| Q |
172 |
tataatcttgattggtttactagtgcttccaagaatgagtgctctgctgctattggcttcaagtggatgcttaatcaggta |
252 |
Q |
| |
|
|||||||| || ||||||| ||||||||| || ||||||||| | |||||| ||||||| ||||||||||||||||||||| |
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| T |
33930286 |
tataatctagactggtttaatagtgcttctaaaaatgagtgcacggctgctgttggcttgaagtggatgcttaatcaggta |
33930366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 33930146 - 33930230
Alignment:
| Q |
32 |
tgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttc |
116 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| || ||||| ||||||||| |||| ||||||||||||| ||||| ||||| |
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| T |
33930146 |
tgtcgatgcagagatctgggagtggatggtttgagacgtttttaaatagtcatcctaacataagctcaaatggggaaatcttttc |
33930230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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