View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8540_high_7 (Length: 444)
Name: NF8540_high_7
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Original strand, 3706477 - 3706910
Alignment:
| Q |
11 |
cacacaacaccaatctcgttatacggcggtaaaatgtggcagatgtgatgcggttgtagagacttcaaaatcttttcctccatacactagccgcaaatgt |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3706477 |
cacacaacgccaatctcgttatacggcggaaaaatgtggcagatgtgatgccgttgtagagacttcaaaatcttttcctccatacactagccgcaaatgc |
3706576 |
T |
|
| Q |
111 |
ggttgttgagagtaatttaaacaatgaagtgatcttttttataggtatggaatgcgctatcaaatattgaagcaataaccatagttgcatcagcaccaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3706577 |
ggttgttgagagtaatttaaacaatgaagtgatcttttttataggtatggaatgcgctatcaaatattgaagtaataaccatagttgcatcagcaccaaa |
3706676 |
T |
|
| Q |
211 |
gaggtccttagcagccaaattgttagtcaaacgtgctgttcaagcttggaaacaaaagaatccttgctatcatgttgatgattgttcagccatatgcttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3706677 |
gaggtccttagcagccaaattgttagtcaaacgtgctgttcaagcttggaaacaaaagaatccttgttatcatgttgatgattgttcagccatatgcttg |
3706776 |
T |
|
| Q |
311 |
ttcttgaatgatcagccagttaatctgagagggaataaaagacatcgctagaagaacctacaatattgctcttgatctagaaattacttctaaattgcgg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3706777 |
ttcttgaatgatcagccagttaatctgagagggaataaaagacatcgctagaagaacctacaatattgctcttgatctagaaattacttctaaattgcgg |
3706876 |
T |
|
| Q |
411 |
tctacaacttcaattgcagctgtaacataacagt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3706877 |
tctacaacttcaattgcagctgtaacataacagt |
3706910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University