View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_high_9 (Length: 404)
Name: NF8540_high_9
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_high_9 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 392
Target Start/End: Complemental strand, 902 - 500
Alignment:
| Q |
5 |
caatatcgtggaacaaataataaattacaagtgagtgatga---gtacatgtgccctaaatttatgacccatgttaaggaacttaatataaatatttcat |
101 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |
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| T |
902 |
caatatcgtggaacaaataacaaattacaagtgagtgatgatgagtacatgtgccctaagtttatgacccatgttgaggaacttaatataaaaatttcat |
803 |
T |
|
| Q |
102 |
tagtaagacnnnnnnnnggttaggaaacatgagtacactaaaagacta-gtctaaacttctgaaatttcattagtaagacaacaaaaaatggttacccat |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
802 |
tagtaagacaaaaaaa-ggttaggaaacatgagtacactaaaagactaagtctaaacttctgaaatttcattagtaagacaacaaaaaatggttactcat |
704 |
T |
|
| Q |
201 |
atcca-----------acacgagttgtgctattcaccaggaagagagnnnnnnnnnnnnnnccgcgaaatgtgtgactgatttttcttgaaaaacaattt |
289 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
703 |
atcctcccttttgcctacacgagttgtgctattcaccacgaagagagaaaaaaacgaaaaaccgcgaaatgtatgactgatttttcttgaaaaacaattc |
604 |
T |
|
| Q |
290 |
cgctgtgtata-gcagcgctgtaacagaaaacatgcaggtagtggttaaaatagatcccttcgttatttattcttagaaaagttttcttaggaacaatca |
388 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
603 |
cgctgtgtataagcagcgctgtaacagaaaacatgcaggtagtggttaaaatagatgccttcgttatttattcttggaaaagttttcgtaggaacaatca |
504 |
T |
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| Q |
389 |
tttt |
392 |
Q |
| |
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|||| |
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| T |
503 |
tttt |
500 |
T |
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Back To:
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Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 392
Target Start/End: Complemental strand, 6611614 - 6611212
Alignment:
| Q |
5 |
caatatcgtggaacaaataataaattacaagtgagtgatga---gtacatgtgccctaaatttatgacccatgttaaggaacttaatataaatatttcat |
101 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |
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| T |
6611614 |
caatatcgtggaacaaataacaaattacaagtgagtgatgatgagtacatgtgccctaagtttatgacccatgttgaggaacttaatataaaaatttcat |
6611515 |
T |
|
| Q |
102 |
tagtaagacnnnnnnnnggttaggaaacatgagtacactaaaagacta-gtctaaacttctgaaatttcattagtaagacaacaaaaaatggttacccat |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6611514 |
tagtaagacaaaaaaa-ggttaggaaacatgagtacactaaaagactaagtctaaacttctgaaatttcattagtaagacaacaaaaaatggttactcat |
6611416 |
T |
|
| Q |
201 |
atcca-----------acacgagttgtgctattcaccaggaagagagnnnnnnnnnnnnnnccgcgaaatgtgtgactgatttttcttgaaaaacaattt |
289 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
6611415 |
atcctcccttttgcctacacgagttgtgctattcaccacgaagagagaaaaaaacgaaaaaccgcgaaatgtatgactgatttttcttgaaaaacaattc |
6611316 |
T |
|
| Q |
290 |
cgctgtgtata-gcagcgctgtaacagaaaacatgcaggtagtggttaaaatagatcccttcgttatttattcttagaaaagttttcttaggaacaatca |
388 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
6611315 |
cgctgtgtataagcagcgctgtaacagaaaacatgcaggtagtggttaaaatagatgccttcgttatttattcttggaaaagttttcgtaggaacaatca |
6611216 |
T |
|
| Q |
389 |
tttt |
392 |
Q |
| |
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|||| |
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|
| T |
6611215 |
tttt |
6611212 |
T |
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