View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8540_low_10 (Length: 440)

Name: NF8540_low_10
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8540_low_10
NF8540_low_10
[»] chr5 (6 HSPs)
chr5 (92-425)||(39122755-39123086)
chr5 (15-63)||(38964407-38964455)
chr5 (5-66)||(2409205-2409266)
chr5 (27-66)||(21180593-21180632)
chr5 (27-66)||(27036872-27036911)
chr5 (22-66)||(27692856-27692900)
[»] chr8 (3 HSPs)
chr8 (15-63)||(513078-513126)
chr8 (336-395)||(28412579-28412638)
chr8 (249-285)||(34221065-34221101)
[»] chr4 (3 HSPs)
chr4 (15-63)||(31590847-31590895)
chr4 (5-66)||(49883039-49883100)
chr4 (22-66)||(49228059-49228103)
[»] chr6 (2 HSPs)
chr6 (249-318)||(9422378-9422447)
chr6 (252-318)||(31612616-31612682)
[»] chr2 (2 HSPs)
chr2 (5-66)||(42900041-42900102)
chr2 (5-66)||(16314448-16314509)
[»] chr1 (2 HSPs)
chr1 (5-66)||(33040648-33040709)
chr1 (257-321)||(9850568-9850631)
[»] chr3 (4 HSPs)
chr3 (249-376)||(1386436-1386562)
chr3 (5-66)||(33141908-33141969)
chr3 (249-312)||(50976719-50976782)
chr3 (249-312)||(51079851-51079914)
[»] chr7 (3 HSPs)
chr7 (5-60)||(28537581-28537636)
chr7 (258-303)||(35586468-35586513)
chr7 (22-66)||(23559185-23559229)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 92 - 425
Target Start/End: Complemental strand, 39123086 - 39122755
Alignment:
Q  92 ggatgcaaaatttagttataatatcatgtgtagttagttgtaatatgaccgaaataactaatcatttattctttgattgttctggttctagaaagttgtg 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39123086 ggatgcaaaatttagttataatatcatgtgtggttagttgtaatatgaccgaaataactaatcatttattcattgattgttctggttctagaaagttgtg 39122987  T
Q  192 tgtagatgttttatcatggttagaaattagttgtataatgataaatannnnnnnnnngtcatgcagttcaattcataggtttggtttctcaaggaaagaa 291  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  39122986 tgtagatgttttatcatggttaggaattagttgtgtaatgataaatatttttttt--gtcatgcagttcaattcataggtttggtttctcaaggaaagaa 39122889  T
Q  292 agtgaatgaatgatttcatgcgatttgattgataaacatttactcaatttggaagcatcgtaagtatgtggtgtttagtaattaggattgtttaactcgt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |    
T  39122888 agtgaatgaatgatttcatgcgatttgattgataaacatttactcaatttaaaagcatcgtaagtatgtggtgtttagtaattaggattgtttaactcat 39122789  T
Q  392 acacacctggacacagtataactcatatggtatg 425  Q
    ||||||||| ||||||||||||||||||||||||    
T  39122788 acacacctgaacacagtataactcatatggtatg 39122755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 38964407 - 38964455
Alignment:
Q  15 ttttagttaatatttgcggctccccctaatattttgatcaagatccgcc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38964407 ttttagttaatatttgcggctccccctaatattttgatcaagatccgcc 38964455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 2409205 - 2409266
Alignment:
Q  5 aattataacattttagttaatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    |||||||| ||||||| || ||||| ||||||||||||| ||||||| ||||||||||||||    
T  2409205 aattataatattttaggtagtatttacggctccccctaacattttgagcaagatccgccact 2409266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 21180632 - 21180593
Alignment:
Q  27 tttgcggctccccctaatattttgatcaagatccgccact 66  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  21180632 tttgcggctccccctaacattttgagcaagatccgccact 21180593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 27036911 - 27036872
Alignment:
Q  27 tttgcggctccccctaatattttgatcaagatccgccact 66  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  27036911 tttgcggctccccctaacattttgagcaagatccgccact 27036872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 27692856 - 27692900
Alignment:
Q  22 taatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    ||||| ||||||||||||| |||||||||  ||||||||||||||    
T  27692856 taatagttgcggctcccccgaatattttgggcaagatccgccact 27692900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 513126 - 513078
Alignment:
Q  15 ttttagttaatatttgcggctccccctaatattttgatcaagatccgcc 63  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  513126 ttttagttaatatttacggctccccctaatattttgatcaagatccgcc 513078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 28412638 - 28412579
Alignment:
Q  336 caatttggaagcatcgtaagtatgtggtgtttagtaattaggattgtttaactcgtacac 395  Q
    ||||||||||||||| ||| ||||||||||||| |||| ||||||||||| |||||||||    
T  28412638 caatttggaagcatcctaattatgtggtgtttaataatcaggattgtttatctcgtacac 28412579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 34221065 - 34221101
Alignment:
Q  249 gtcatgcagttcaattcataggtttggtttctcaagg 285  Q
    |||||||||||||||||||| ||||||||||||||||    
T  34221065 gtcatgcagttcaattcatatgtttggtttctcaagg 34221101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 31590895 - 31590847
Alignment:
Q  15 ttttagttaatatttgcggctccccctaatattttgatcaagatccgcc 63  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31590895 ttttagttaatatttacggctccccctaatattttgatcaagatccgcc 31590847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 49883039 - 49883100
Alignment:
Q  5 aattataacattttagttaatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    |||||||| ||||||| || ||||| ||||||||||||| ||||||| ||||||||||||||    
T  49883039 aattataatattttaggtagtatttacggctccccctaacattttgagcaagatccgccact 49883100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 49228059 - 49228103
Alignment:
Q  22 taatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    ||||| ||||||||||||| |||||||||  ||||||||||||||    
T  49228059 taatagttgcggctccccccaatattttgggcaagatccgccact 49228103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 9422378 - 9422447
Alignment:
Q  249 gtcatgcagttcaattcataggtttggtttctcaaggaaagaaagtgaatgaatgatttcatgcgatttg 318  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||| || ||||| ||||| | ||||||    
T  9422378 gtcatgcagttcaattcatgggtttgatttctcaagaaaagaaagtaaaggaatgttttcacgtgatttg 9422447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 31612616 - 31612682
Alignment:
Q  252 atgcagttcaattcataggtttggtttctcaaggaaagaaagtgaatgaatgatttcatgcgatttg 318  Q
    |||| ||||| || ||||||||||||||||| || |||||||||||| |||| |||||||| |||||    
T  31612616 atgcggttcagtttataggtttggtttctcatggtaagaaagtgaataaatgctttcatgcaatttg 31612682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 42900102 - 42900041
Alignment:
Q  5 aattataacattttagttaatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    |||||||| ||||||| || ||||| ||||||||||||| ||||||| ||||||||||||||    
T  42900102 aattataatattttagctagtatttacggctccccctaacattttgagcaagatccgccact 42900041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 16314509 - 16314448
Alignment:
Q  5 aattataacattttagttaatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    |||||||| ||||| | || ||||| ||||||||||||| ||||||| ||||||||||||||    
T  16314509 aattataatattttcgatagtatttacggctccccctaacattttgagcaagatccgccact 16314448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 33040648 - 33040709
Alignment:
Q  5 aattataacattttagttaatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    |||||||| ||||||| || ||||| ||||||||||||| ||||||| ||||||||||||||    
T  33040648 aattataatattttaggtagtatttacggctccccctaacattttgagcaagatccgccact 33040709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 9850568 - 9850631
Alignment:
Q  257 gttcaattcataggtttggtttctcaaggaaagaaagtgaatgaatgatttcatgcgatttgatt 321  Q
    |||||||||| ||||||||||||| | |  || |||||||||||||||||||||| | |||||||    
T  9850568 gttcaattcacaggtttggtttcttatgagaa-aaagtgaatgaatgatttcatgtgttttgatt 9850631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 1386562 - 1386436
Alignment:
Q  249 gtcatgcagttcaattcataggtttggtttctcaaggaaagaaagtgaatgaatgatttcatgcgatttgattgataaacatttactcaatttggaagca 348  Q
    ||||||||||| |||||||| ||||| ||| |||| ||||||||||| ||||||| ||||||| |||||  || |||  |||||  | |||||||||  |    
T  1386562 gtcatgcagtttaattcatatgtttgattt-tcaaagaaagaaagtggatgaatgttttcatgtgatttagttaatatgcatttgataaatttggaatta 1386464  T
Q  349 tcgtaagtatgtggtgtttagtaattag 376  Q
    |||||| ||||| |||||| | ||||||    
T  1386463 tcgtaactatgttgtgttttgcaattag 1386436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 33141969 - 33141908
Alignment:
Q  5 aattataacattttagttaatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    |||||||| ||||||| || ||||| ||||||||||||| ||||||| ||||||||| ||||    
T  33141969 aattataatattttagctagtatttacggctccccctaacattttgagcaagatccgtcact 33141908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 50976782 - 50976719
Alignment:
Q  249 gtcatgcagttcaattcataggtttggtttctcaaggaaagaaagtgaatgaatgatttcatgc 312  Q
    ||||||| |||||||||||| ||||| |||||||| |||||||| |||| ||||  ||||||||    
T  50976782 gtcatgcggttcaattcataagtttgatttctcaatgaaagaaattgaaggaatactttcatgc 50976719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 51079914 - 51079851
Alignment:
Q  249 gtcatgcagttcaattcataggtttggtttctcaaggaaagaaagtgaatgaatgatttcatgc 312  Q
    ||||||| |||||||||||| ||||| |||||||| |||||||| |||| ||||  ||||||||    
T  51079914 gtcatgcggttcaattcataagtttgatttctcaatgaaagaaattgaaggaatactttcatgc 51079851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 28537581 - 28537636
Alignment:
Q  5 aattataacattttagttaatatttgcggctccccctaatattttgatcaagatcc 60  Q
    |||||||| |||||||||||||||||  |||||||| |||||||||  ||||||||    
T  28537581 aattataatattttagttaatatttgacgctccccccaatattttgggcaagatcc 28537636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 35586468 - 35586513
Alignment:
Q  258 ttcaattcataggtttggtttctcaaggaaagaaagtgaatgaatg 303  Q
    |||||||||||| |||| ||||||||| |||||||||||| |||||    
T  35586468 ttcaattcatagttttgatttctcaagaaaagaaagtgaaagaatg 35586513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 23559229 - 23559185
Alignment:
Q  22 taatatttgcggctccccctaatattttgatcaagatccgccact 66  Q
    ||||| ||||||||||||| |||||||||  ||||||||||||||    
T  23559229 taatagttgcggctccccccaatattttgggcaagatccgccact 23559185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University