View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_low_11 (Length: 439)
Name: NF8540_low_11
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 1424230 - 1424470
Alignment:
| Q |
17 |
taatttcctttacaataatttcttggaggaaacatccaatattgtgttaagatactcgatttgaaaagatagctatgttgtttctttcaaaatttagtag |
116 |
Q |
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| T |
1424230 |
taatttcctttacaataatttcttggaggaaacatccaatattgtgtta-gatactcgatttcaaaagatagctatgttgtttctttcaaaatttagtag |
1424328 |
T |
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| Q |
117 |
gtttgcatattgaatcaattgacattgagaaatnnnnnnnnnntgacttatatttgtgaatggcattcaagaaatacatttagaagaactgattttgctt |
216 |
Q |
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| T |
1424329 |
gtttgcatattgaatcaattgacattgagaaataaaaaaaattt-acttatatttgtgaatggcattcaagaaatacatttagaagaactgattttgctt |
1424427 |
T |
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| Q |
217 |
gaatagggaatttataatcacctttttgaagtatacaaatata |
259 |
Q |
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| T |
1424428 |
gaatagggaatttataatcaactttttgaagtatacaaatata |
1424470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 322 - 432
Target Start/End: Original strand, 1424719 - 1424829
Alignment:
| Q |
322 |
ggcaaaaatgaatcattttaaacgatcattaatgtcattgatcacattatcaaatccccacaaatttagagccaaagttaataattccctcttttgcttt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1424719 |
ggcaaaaatgaatcattttaaacgatcattaatgtcattgatcacattatcaaatccccacaaatttagagccaaagttaataattccctcttttacttt |
1424818 |
T |
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| Q |
422 |
atttcttctca |
432 |
Q |
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| T |
1424819 |
atttcttctca |
1424829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 1424478 - 1424521
Alignment:
| Q |
278 |
aaaatataagtatcttgtgtgtgaccctcctagttttgatttac |
321 |
Q |
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| T |
1424478 |
aaaatacaagcatcttgtgtgtgacactcctagttttgatttac |
1424521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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