View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8540_low_12 (Length: 415)
Name: NF8540_low_12
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 33390883 - 33391264
Alignment:
| Q |
19 |
tataggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33390883 |
tataggccaagtaatcataggtactccagcagctacactttccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaaga |
33390982 |
T |
|
| Q |
119 |
atcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctatcttctgcatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33390983 |
atcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctatcttctgcatttt |
33391082 |
T |
|
| Q |
219 |
tcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttacttccaaagcacac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33391083 |
tcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaaggaagtgatttttacttccaaagcacac |
33391182 |
T |
|
| Q |
319 |
ataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagtat |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33391183 |
ataaacaat---tgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttctgcagtat |
33391264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 33383168 - 33382902
Alignment:
| Q |
22 |
aggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatc |
121 |
Q |
| |
|
||||||||||| |||||||| |||||| | |||| ||| ||| | | |||||||||||||||||||||| ||||||||| |||| |||| ||||||| |
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|
| T |
33383168 |
aggccaagtaacgataggtaccccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatc |
33383069 |
T |
|
| Q |
122 |
aaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaa---ttctagaagacctttaat-ttctctatcttctgcattt |
217 |
Q |
| |
|
|| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || | ||| ||||| ||||||| || |
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|
| T |
33383068 |
aacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagcc----aatcttctccatcttctttgctt |
33382973 |
T |
|
| Q |
218 |
ttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagtt |
288 |
Q |
| |
|
|| |||||||||||| |||| || ||| |||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
33382972 |
ctcctcaccacccaaataaaaaattgcccggatgcttcaagtcccgtagcaatttctttaagctgagagtt |
33382902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 33401768 - 33401878
Alignment:
| Q |
34 |
cataggtactccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgagga |
133 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| ||||||||||||||||||||| || |||||| ||| | ||| | | ||||||||| |||||| |
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|
| T |
33401768 |
cataggtactccagcacacacaccttctaaagttgagttccatccacaatgagtcataaaccctccaacagcctcatgctccaaaatcaaaagctgagga |
33401867 |
T |
|
| Q |
134 |
gaccaacctct |
144 |
Q |
| |
|
| ||||||||| |
|
|
| T |
33401868 |
gcccaacctct |
33401878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 18989618 - 18989249
Alignment:
| Q |
19 |
tataggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
18989618 |
tataggccaagtaatcataggtactccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaa |
18989519 |
T |
|
| Q |
119 |
atcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctatcttctgcatttt |
218 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||| |||||||||||||| |||| |
|
|
| T |
18989518 |
atcaaaagttgaagaggccaacctcttataattagtccttttcctttcattattttctcaaattctggtagacctt---tttctctatcttctctctttt |
18989422 |
T |
|
| Q |
219 |
tcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttacttccaaagcacac |
318 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
18989421 |
tcttcaccaccaaaactaaatctttccacgatgctttgagtcccatagaaatttctttaagctgagagttaaggaagtgatttgtacttccaaagcacac |
18989322 |
T |
|
| Q |
319 |
ataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttctttt |
394 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18989321 |
ataaacaa---ctaagttgatatcttttgtgtcaagccactttagacacttgtgtttattgatagagggttctttt |
18989249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 107 - 394
Target Start/End: Complemental strand, 19001964 - 19001683
Alignment:
| Q |
107 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaagacctttaatttctctat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | || ||||| | ||| ||| |
|
|
| T |
19001964 |
ttatgttgaagaatcaaaagttgaggagaccaacctcttataattagtccgtttcctttcatccttttctcaaattctggtagtcctttt-tctctatat |
19001866 |
T |
|
| Q |
207 |
cttctgcatttttcttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttact |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
19001865 |
cttctctctttttcttcaccacccaaacaaaatctttccccgatgctttgagtcccatatcaatttctttaatctgagagttaaggaagtgatttgtact |
19001766 |
T |
|
| Q |
307 |
tccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttctttt |
394 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19001765 |
tccaaagaacacataaacaa---ctgagttgatatc--ttgtgtcaagccactttagacactcatgtttattgatagagggttctttt |
19001683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 22 - 375
Target Start/End: Original strand, 27688653 - 27689003
Alignment:
| Q |
22 |
aggccaagtaatcataggtactccagcagctacacattccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatc |
121 |
Q |
| |
|
||||||||||||||||||||||||||| | || | ||| ||| | |||||||| ||||| ||||||| ||| || || |||| ||||| ||||||| |
|
|
| T |
27688653 |
aggccaagtaatcataggtactccagctaccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatc |
27688752 |
T |
|
| Q |
122 |
aaaagttgaggagaccaacctcttataattagtccctttcctttcattcttttctcaaattctagaaga--cctttaatttctctatcttctgcattttt |
219 |
Q |
| |
|
| | ||| |||||||||||||||||||||||||| ||||||| | |||||| ||| ||| || | | || || || ||| |||||||| | | | |
|
|
| T |
27688753 |
atcacttgtggagaccaacctcttataattagtccttttccttccgttctttcctcgaatccttcaggtagccattcat--ctccatcttctgtctgtgt |
27688850 |
T |
|
| Q |
220 |
cttcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaagaaagtgatttttacttccaaagcacaca |
319 |
Q |
| |
|
| |||| ||||||| ||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||| |||| |
|
|
| T |
27688851 |
cctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatg |
27688950 |
T |
|
| Q |
320 |
taaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgttt |
375 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27688951 |
taaacaa---ctgagttgatattttttgtgtcaagccactttagacactcgtgttt |
27689003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 14710100 - 14710151
Alignment:
| Q |
72 |
tccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaa |
123 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| || ||| ||||| |
|
|
| T |
14710100 |
tccaaccacaatgagtcacaattcctccaatagctttattttcaagtatcaa |
14710151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 17620215 - 17620164
Alignment:
| Q |
72 |
tccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaa |
123 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| || ||| ||||| |
|
|
| T |
17620215 |
tccaaccacaatgagtcacaattcctccaatagctttattttcaagtatcaa |
17620164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 12613729 - 12613691
Alignment:
| Q |
70 |
gttccatccacaatgagtcacaattgctccaatagcttt |
108 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
12613729 |
gttccaaccacaatgagtcacaattcctccaatagcttt |
12613691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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