View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8540_low_14 (Length: 397)

Name: NF8540_low_14
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8540_low_14
NF8540_low_14
[»] chr3 (9 HSPs)
chr3 (19-264)||(1263267-1263507)
chr3 (19-152)||(1337305-1337438)
chr3 (23-121)||(1323229-1323327)
chr3 (336-382)||(10323895-10323941)
chr3 (336-382)||(19920553-19920599)
chr3 (336-382)||(34333139-34333185)
chr3 (336-382)||(2364047-2364093)
chr3 (296-337)||(1263946-1263988)
chr3 (336-382)||(7312547-7312593)
[»] scaffold0034 (1 HSPs)
scaffold0034 (336-382)||(106167-106213)
[»] chr8 (8 HSPs)
chr8 (336-382)||(171873-171919)
chr8 (336-382)||(8299573-8299619)
chr8 (336-382)||(20496854-20496900)
chr8 (336-382)||(7924156-7924202)
chr8 (336-382)||(32266334-32266380)
chr8 (336-382)||(13396158-13396204)
chr8 (336-382)||(32567589-32567635)
chr8 (336-382)||(41665693-41665739)
[»] chr7 (6 HSPs)
chr7 (336-382)||(4938452-4938498)
chr7 (336-382)||(235763-235809)
chr7 (336-382)||(11277576-11277622)
chr7 (336-382)||(31177629-31177675)
chr7 (336-382)||(47876753-47876799)
chr7 (336-382)||(29967745-29967791)
[»] chr6 (3 HSPs)
chr6 (336-382)||(12733895-12733941)
chr6 (336-382)||(21167995-21168041)
chr6 (336-382)||(24767748-24767794)
[»] chr5 (9 HSPs)
chr5 (336-382)||(12824969-12825015)
chr5 (336-382)||(27117485-27117531)
chr5 (336-382)||(30732638-30732684)
chr5 (336-382)||(42513490-42513536)
chr5 (336-382)||(3418553-3418599)
chr5 (336-382)||(8227796-8227842)
chr5 (336-382)||(12820273-12820319)
chr5 (336-382)||(23238153-23238199)
chr5 (336-382)||(42927901-42927947)
[»] chr4 (9 HSPs)
chr4 (336-382)||(13271215-13271261)
chr4 (336-382)||(23642915-23642961)
chr4 (336-382)||(47418575-47418621)
chr4 (336-380)||(160015-160059)
chr4 (336-382)||(15739991-15740037)
chr4 (336-382)||(7403683-7403729)
chr4 (336-382)||(19755032-19755078)
chr4 (336-382)||(19784728-19784774)
chr4 (336-382)||(47686219-47686265)
[»] chr2 (1 HSPs)
chr2 (336-382)||(4551939-4551985)
[»] chr1 (8 HSPs)
chr1 (336-382)||(6050372-6050418)
chr1 (336-382)||(35540819-35540865)
chr1 (336-382)||(51052250-51052296)
chr1 (336-382)||(26059661-26059707)
chr1 (336-382)||(4842174-4842220)
chr1 (336-382)||(11909429-11909475)
chr1 (336-382)||(12813528-12813574)
chr1 (336-382)||(6259587-6259633)
[»] scaffold0369 (1 HSPs)
scaffold0369 (336-376)||(11529-11569)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 1263267 - 1263507
Alignment:
Q  19 aattgaagcatctgggattccttatacttttgtctctgcaaattgttttggtgcatattttgtgaatttcttgcttcatccgtatgagaacaagaaggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1263267 aattgaagcatctgggattccttatacttttgtctctgcaaattgttttggggcatattttgtgaatttcttgcttcatccgtatgagaacaagaaggat 1263366  T
Q  119 attatggtctatggcaccggtgaaactaaaggtatgggttaacaaaatctaaatcaaatgttatttttggcctagtatagcatgatnnnnnnnnnnnnnn 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  1263367 attatggtctatggcaccggtgaaactaaaggtatgggttaacaaaatctaaatcaaatgttatttttggcctagtatagcatgat-----aaaaaaaaa 1263461  T
Q  219 ttattcgtcgattaggccaggacaactcattgattaaacaataata 264  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  1263462 ttattcgtcgattaggtcaggacaactcattgattaaacaataata 1263507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 1337438 - 1337305
Alignment:
Q  19 aattgaagcatctgggattccttatacttttgtctctgcaaattgttttggtgcatattttgtgaatttcttgcttcatccgtatgagaacaagaaggat 118  Q
    |||||||||| | || || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||| |||    
T  1337438 aattgaagcagcaggaatcccttatacttttgtctcagcaaattgttttggtgcatactttgtgaatttcttgcttcgtccttatgaaaacaagaaagat 1337339  T
Q  119 attatggtctatggcaccggtgaaactaaaggta 152  Q
    ||| | ||||| ||||  |||||| | |||||||    
T  1337338 attgttgtctacggcagtggtgaatccaaaggta 1337305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 1323327 - 1323229
Alignment:
Q  23 gaagcatctgggattccttatacttttgtctctgcaaattgttttggtgcatattttgtgaatttcttgcttcatccgtatgagaacaagaaggatatt 121  Q
    |||||| |||| || |||||||||| ||||||||||||||||||||||||||| ||||| ||| |||| |||| |||||||||||| || || ||||||    
T  1323327 gaagcagctggaatcccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatcttacttcgtccgtatgagaaaaataaagatatt 1323229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 10323895 - 10323941
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  10323895 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 10323941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 19920553 - 19920599
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  19920553 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 19920599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 34333139 - 34333185
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  34333139 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 34333185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 2364093 - 2364047
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  2364093 ggttgttcgagagggcgacggtctttcttccacttgatttgattgct 2364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 1263946 - 1263988
Alignment:
Q  296 ctttatttgtccaa-caaaataccaatgttaataatgttttgg 337  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  1263946 ctttatttgtccaaacaaaataccaatgttaataatgttttgg 1263988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 7312593 - 7312547
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||    
T  7312593 ggttgttcgagagggcgacgatctttcttgcacttgatttggttgct 7312547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 106167 - 106213
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  106167 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 106213  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 171919 - 171873
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  171919 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 171873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 8299619 - 8299573
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8299619 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 8299573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 20496900 - 20496854
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  20496900 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 20496854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 7924202 - 7924156
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||    
T  7924202 ggttgttcgagagggcaacggtctttcttccacttgatttggttgct 7924156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 32266380 - 32266334
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  32266380 ggttgttcgagagggcgtcggtctttcttccacttaatttggttgct 32266334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 13396204 - 13396158
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||    
T  13396204 ggttgtttgagaaggcgacggtctttcttccacttgatttggttgct 13396158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 32567589 - 32567635
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||    
T  32567589 ggttgttcaagagggcgtcggtctttcttccacttaatttggttgct 32567635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 41665693 - 41665739
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||| |||| |||| || ||||||||||||||||||||||||||    
T  41665693 ggttgtttgagaaggcgacgatctttcttccacttgatttggttgct 41665739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 4938452 - 4938498
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4938452 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 4938498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 235763 - 235809
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  235763 ggttgttcgagagggcgacgttctttcttccacttgatttggttgct 235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 11277576 - 11277622
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  11277576 ggttgttcgagagggcgtcggtctttcttccacttaatttggttgct 11277622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 31177629 - 31177675
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  31177629 ggttgttcgagtgggcgacggtctttcttccacttgatttggttgct 31177675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 47876799 - 47876753
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  47876799 ggttgttcgagagggcgatggtctttcttccacttgatttggttgct 47876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 29967791 - 29967745
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    |||||||||||||| || ||||||||||||||||| |||||||||||    
T  29967791 ggttgttcgagaggacgtcggtctttcttccacttaatttggttgct 29967745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 12733941 - 12733895
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  12733941 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 12733895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 21168041 - 21167995
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||    
T  21168041 ggttgttcgagagggagacggtctttcttccacttgatttggttgct 21167995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 24767748 - 24767794
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |  ||||| ||||||||||||||||||||    
T  24767748 ggttgttcgagagggcgacattcttttttccacttgatttggttgct 24767794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 12825015 - 12824969
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  12825015 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 12824969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 27117485 - 27117531
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  27117485 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 27117531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 30732638 - 30732684
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  30732638 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 30732684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 42513536 - 42513490
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  42513536 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 42513490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 3418599 - 3418553
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  3418599 ggttgttcgagagggcgacggtctttcttccatttgatttggttgct 3418553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 8227842 - 8227796
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  8227842 ggttgttcgagagggcgtcggtctttcttccacttaatttggttgct 8227796  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 12820273 - 12820319
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  12820273 ggttgttcgagagggcgacggtctttcttccatttgatttggttgct 12820319  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 23238199 - 23238153
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  23238199 ggttgttcgagagggcgtcggtctttcttccacttaatttggttgct 23238153  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 42927947 - 42927901
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| || || || ||||||||||||||||||||    
T  42927947 ggttgttcgagagggcgacgttcatttttccacttgatttggttgct 42927901  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 13271215 - 13271261
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  13271215 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 13271261  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 23642915 - 23642961
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23642915 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 23642961  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 47418621 - 47418575
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  47418621 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 47418575  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 160015 - 160059
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttg 380  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  160015 ggttgttcgagagggcgacggtctttcttccacttgatttggttg 160059  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 15740037 - 15739991
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||    
T  15740037 ggttgttcgagagggagacggtctttcttccacttgatttggttgct 15739991  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 7403729 - 7403683
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  7403729 ggttgttcgagagggcgacgttcttttttccacttgatttggttgct 7403683  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 19755078 - 19755032
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||    
T  19755078 ggttgtttgagaaggcgacggtctttcttccacttgatttggttgct 19755032  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 19784728 - 19784774
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||    
T  19784728 ggttgtttgagaaggcgacggtctttcttccacttgatttggttgct 19784774  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 47686219 - 47686265
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    |||||||| |||||| | ||||||||||| |||||||||||||||||    
T  47686219 ggttgttcaagagggtgacggtctttctttcacttgatttggttgct 47686265  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 4551985 - 4551939
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4551985 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 4551939  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 6050418 - 6050372
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6050418 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 6050372  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 35540865 - 35540819
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  35540865 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 35540819  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 51052296 - 51052250
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  51052296 ggttgttcgagagggcgacggtctttcttccacttgatttggttgct 51052250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 26059707 - 26059661
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||    
T  26059707 ggttgttcgagagggtgacggtctttcttccacttgatttggttgct 26059661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 4842220 - 4842174
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||    
T  4842220 ggttgtttgagaaggcgacggtctttcttccacttgatttggttgct 4842174  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 11909429 - 11909475
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||||    
T  11909429 ggttgtttgagagggtgacggtctttcttccacttgatttggttgct 11909475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 12813528 - 12813574
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||    
T  12813528 ggttgtttgagaaggcgacggtctttcttccacttgatttggttgct 12813574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 6259633 - 6259587
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttggttgct 382  Q
    ||||||||||||||| | |||||||| ||||| ||||||||||||||    
T  6259633 ggttgttcgagagggagacggtcttttttccatttgatttggttgct 6259587  T

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Target: scaffold0369 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 11529 - 11569
Alignment:
Q  336 ggttgttcgagagggcgccggtctttcttccacttgatttg 376  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  11529 ggttgttcgagagggcggcggtctttcttccacttgatttg 11569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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