View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_low_17 (Length: 363)
Name: NF8540_low_17
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 162 - 363
Target Start/End: Original strand, 13886941 - 13887144
Alignment:
| Q |
162 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttatgaagcatatcaccaaatttaatact |
261 |
Q |
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| T |
13886941 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttctgaagcatatcaccaaatttaatact |
13887040 |
T |
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| Q |
262 |
ctctca-gcctta-caaatgattatttgtcaacatgttgatgaattggtcatctcacacatcacatatagtcgatacgttcgaacaacaataaacatatt |
359 |
Q |
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| T |
13887041 |
ctctcaggcctcagctaatgattatttctcaacatgttgatgaattggtcatctcacacatcacatgtagtcgatacgttcgaacaacaataaacatatt |
13887140 |
T |
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| Q |
360 |
tttc |
363 |
Q |
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|||| |
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| T |
13887141 |
tttc |
13887144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 13886754 - 13886904
Alignment:
| Q |
15 |
tcgatggaagtagttgtgtctactttctagtcttgtaacnnnnnnnggcactcattggttatagagaggaaaaatgtagtggaatttgtataaatgagt- |
113 |
Q |
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| T |
13886754 |
tcgatggaagtagttatgtctactttctggtcttgtaaaaataaaaggcac-cattggttatagagaggaaaaatgtagtggaatttgtataaatgagta |
13886852 |
T |
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| Q |
114 |
-aaagtttcattggtagtgttgtggattctcatcttctttgctagcttctat |
164 |
Q |
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| T |
13886853 |
aaaagtttcattggtgctgttctggattctcatcttctttgctaacttctat |
13886904 |
T |
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