View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_low_19 (Length: 319)
Name: NF8540_low_19
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 36216475 - 36216179
Alignment:
| Q |
1 |
gtttacgttgattttgtgtggatgtccgatctttcacaaaacacatttaaagttgagggannnnnnn-atatgttaatccttcgattctcaggagaaaat |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
36216475 |
gtttacgttgattttgtgtggatgtccgatctttcacaaaacacatttaaagttgagggattttttttatatgttaattcttcgattctcaggagaaaat |
36216376 |
T |
|
| Q |
100 |
ggtcttggtaatctgaagttcggttgagagataaataaagtctaatcaagaatctattccacacatgaattgaattcagattctctcgaacaattcatca |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36216375 |
ggtcttggtaatctgaagttcggtcgagagataaataaagtctaataaaaaatttattccacacatgaattgaattcagattctcttgaacaattcatca |
36216276 |
T |
|
| Q |
200 |
ttaatgaaatcaataaatcactcgaatttaattgtttgatttgaagaattatttttaagcggaaaaatcagacaacataacactcaaaacaatggat |
296 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
36216275 |
ttaatgaaatcaataaatcactcgagtttaattgtttgatttgaagaattatttttaagcggacaaatcagaccacataacactcaaaacaatggat |
36216179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 21258325 - 21258294
Alignment:
| Q |
109 |
aatctgaagttcggttgagagataaataaagt |
140 |
Q |
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| T |
21258325 |
aatctgaagttcggttgagagataaataaagt |
21258294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 40509301 - 40509236
Alignment:
| Q |
127 |
gagataaataaagtctaatcaagaatctattccacacatgaattgaattcagattctctcgaacaat |
193 |
Q |
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| T |
40509301 |
gagataaataaaatctgatcaataat-tattctaaacatgaatcaaattcagattctctcgaacaat |
40509236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 44067074 - 44067105
Alignment:
| Q |
109 |
aatctgaagttcggttgagagataaataaagt |
140 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44067074 |
aatctgaagttcggttgagagataaataaagt |
44067105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 38580970 - 38580926
Alignment:
| Q |
108 |
taatctgaagttcggttgagagataaataaagtctaatcaagaat |
152 |
Q |
| |
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|||||| |||||| |||||||||||| ||||||||||| |||||| |
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| T |
38580970 |
taatctaaagttcagttgagagataagtaaagtctaataaagaat |
38580926 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 50122368 - 50122322
Alignment:
| Q |
106 |
ggtaatctgaagttcggttgagagataaataaagtctaatcaagaat |
152 |
Q |
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||||||||||||||||| || |||||||||| | ||||||||||||| |
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|
| T |
50122368 |
ggtaatctgaagttcggctgtgagataaatataatctaatcaagaat |
50122322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 1917445 - 1917377
Alignment:
| Q |
131 |
taaataaagtctaatcaagaatctattccacacatgaattgaattcagattctctcgaacaattcatcat |
200 |
Q |
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| T |
1917445 |
taaataaagtttgatcaataat-tattctaaacatgaatcaaattcagattctctcgaacaatacatcat |
1917377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 1348020 - 1347952
Alignment:
| Q |
131 |
taaataaagtctaatcaagaatctattccacacatgaattgaattcagattctctcgaacaattcatcat |
200 |
Q |
| |
|
|||||||||| | ||||| ||| ||||| | |||||||| |||||||||||||||||||||| |||||| |
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| T |
1348020 |
taaataaagtttgatcaataat-tattctaaacatgaatcaaattcagattctctcgaacaatacatcat |
1347952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 20464797 - 20464841
Alignment:
| Q |
104 |
ttggtaatctgaagttcggttgagagataaataaagtctaatcaa |
148 |
Q |
| |
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|||||||| |||||||||||||| |||||| |||||||| ||||| |
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| T |
20464797 |
ttggtaatttgaagttcggttgaaagataagtaaagtcttatcaa |
20464841 |
T |
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