View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8540_low_20 (Length: 315)
Name: NF8540_low_20
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 39 - 293
Target Start/End: Complemental strand, 32926270 - 32926016
Alignment:
| Q |
39 |
ccttgttcttttttgcttcactgaacaagaaacacaagttctatcacaattgttgcctcaatacaggagttgaaaccaaccataattacctaaattggaa |
138 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32926270 |
ccttgttcgtttttgcttcaatgaacaagaaacacaagttctatcacaattgttgcctcaatacaggagttgaaaccaaccataattacctaaattggaa |
32926171 |
T |
|
| Q |
139 |
agacaatttaaacggagaatacacagcaaaaagtgcgatcactggctcttatctcggagggatgatattgtttcattggagaaatggaattggatttaga |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
32926170 |
agacaatttaaacggagaatacacagcaaaaagtgcgatcactggctcttatctcggagggatgatattgtctcattggagaaatggaattggatttgga |
32926071 |
T |
|
| Q |
239 |
aattaccactttcagctagtgtgcaannnnnnnatatggcaggtgtttcataatt |
293 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
32926070 |
aattaccactttcggctagtgtgcaatttttttatatggcaggtgtttcataatt |
32926016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 33928336 - 33928441
Alignment:
| Q |
160 |
cacagcaaaaagtgcg-atcactggctcttatctcggagggatgatattgtttcattggagaaatggaattggatttagaaattaccactttcagctagt |
258 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
33928336 |
cacagcaaaaagtgtgtatcactggctcttatcttggagggatgatattgtctcattagagaaatggaattggattttgaagttaccactttcagctagt |
33928435 |
T |
|
| Q |
259 |
gtgcaa |
264 |
Q |
| |
|
|||||| |
|
|
| T |
33928436 |
gtgcaa |
33928441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 37501442 - 37501572
Alignment:
| Q |
134 |
tggaaagacaatttaaacggagaatacacagcaaaaagtgcg-atcactggctcttatctcggagggatgatattgtttcattggagaaatggaattgga |
232 |
Q |
| |
|
||||| || |||||||| ||| |||||||| ||||||||| | |||| |||||||||||| |||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
37501442 |
tggaacgataatttaaatggaaaatacacaacaaaaagtgtgtatcattggctcttatcttggagggatgatattgtctcattgaagaaatgaaattgga |
37501541 |
T |
|
| Q |
233 |
tttagaaattaccactttcagctagtgtgca |
263 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| |
|
|
| T |
37501542 |
tttggaaattatcactttcagctagtgtgca |
37501572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 9194098 - 9194016
Alignment:
| Q |
134 |
tggaaagacaatttaaacggagaatacacagcaaaaagtgc-gatcactggctcttatctcggagggatgatattgtttcatt |
215 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
9194098 |
tggatagacaatttaaacgaagaatacacaacaaaaagtgcatatcaccggctcttatctcggagggatggtattgtctcatt |
9194016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 33928294 - 33928336
Alignment:
| Q |
86 |
aattgttgcctcaatacaggagttgaaaccaaccataattacc |
128 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
33928294 |
aattgttacctcagtacaggagttaaaaccaaccataattacc |
33928336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 9194162 - 9194121
Alignment:
| Q |
86 |
aattgttgcctcaatacaggagttgaaaccaaccataattac |
127 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
9194162 |
aattgttgcctcgatgcaggagtggaaaccaaccataattac |
9194121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 10405822 - 10405947
Alignment:
| Q |
134 |
tggaaagacaatttaaacggagaatacacagcaaaaagtgcg-atcactggctcttatctcggagggatgatattgtttcattggagaaatggaattgga |
232 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||| | ||| ||||||||||||||||||| ||| |||||| ||| || ||||||||||||||| |
|
|
| T |
10405822 |
tggaaagataatttaaatggagaatacacgacaaaaagtgtgtatcgctggctcttatctcggaggcatgttattgtctcactgaagaaatggaattgga |
10405921 |
T |
|
| Q |
233 |
tttagaaattaccactttcagctagt |
258 |
Q |
| |
|
||| ||| |||||||||||||||||| |
|
|
| T |
10405922 |
tttggaagttaccactttcagctagt |
10405947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 42347545 - 42347509
Alignment:
| Q |
134 |
tggaaagacaatttaaacggagaatacacagcaaaaa |
170 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
42347545 |
tggaaagacaatttaaatggagaatacacaccaaaaa |
42347509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University