View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_low_22 (Length: 290)
Name: NF8540_low_22
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 23129651 - 23129910
Alignment:
| Q |
20 |
taagtgccaagtttttgagacctcaaataaagagataagattcataccgccacaataaaaaacaacctcatgttctcattaaaatggtttctcatcaaca |
119 |
Q |
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| T |
23129651 |
taagtgccaagtttttgtgacctcaaataaagagataagattcataccgccacaataaaaaacaacctcatgttctcattaaaatggtttctcatcaaca |
23129750 |
T |
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| Q |
120 |
ataataaatttctagaattcaactttctaattttctttcatcaaaaaatcatatacactaatgagttctaagataaacttctcaagtccaccaatacaat |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23129751 |
ataataaatttctagaattcaacttcctaattttctttcatcaaaaaatcatatacactaatgagttctaagataaacttctcaagtccaccaatacaat |
23129850 |
T |
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| Q |
220 |
gcaaatttcatatcaagaaatcaaacctcacaagaaaaaacaccatcatcttctcttcat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23129851 |
gcaaatttcatatcaagaaatcaaacctcacaagaaaaaacaccatcatcttctcttcat |
23129910 |
T |
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