View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8540_low_30 (Length: 238)
Name: NF8540_low_30
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36931773 - 36931996
Alignment:
| Q |
1 |
tagacaaccacttgagtgactttttgaaaagagtgatgctaaacatcacgagagaatttatagcgaatttatcctgatatgttaattgcaatggtac--n |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36931773 |
tagacaaccacttgagtgactttttgaaaagagtgatgctaaacatcacgagagaatttatagcgaatttatcctgatatgttaattgcaatggtacaaa |
36931872 |
T |
|
| Q |
99 |
nnnnnnnggccccac---taaccattcaacaattgcagaatataaaggagtcggctattaggtgtgtcggaatgaatgcctcgtgaaatatgctctcgcg |
195 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36931873 |
aaaaaaaggccccactaataaccattcaacaattgcagaatattaaggagtcggctattagatgtgtcg----gaatgcctcgtgaaatatgctctcgcg |
36931968 |
T |
|
| Q |
196 |
ataaatagtatttccgttttgaaaaata |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36931969 |
ataaatagtatttccgttttgaaaaata |
36931996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University