View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_low_32 (Length: 219)
Name: NF8540_low_32
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 42760345 - 42760529
Alignment:
| Q |
18 |
aatacgttataggaataaattgttgacagagtggttaaacattatcttatttcatgttgttttatcttattcatttgattccattcatcataaattacca |
117 |
Q |
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| T |
42760345 |
aatacgttataggaataaattgttgacagagtggttaaacattatcttatttcatgttgttttatcttattcatttgattccattcatcataaattacca |
42760444 |
T |
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| Q |
118 |
ttcaaacaacattgaaatattcacttcacaaactttgaagaacttgtacacaacacaacatgtccctttattgaaaacgggagaa |
202 |
Q |
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| T |
42760445 |
ttcaaacaacattgaaatattcacttcacaaactttgaagaacttgtacacaacacaacatgtccctttattgaaaacgggagaa |
42760529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 42750892 - 42751067
Alignment:
| Q |
28 |
aggaataaattgttgacagagtggttaaacattatcttatttcatgttgttttatcttattcat--ttgattccattcatcataaattaccattcaaaca |
125 |
Q |
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| T |
42750892 |
aggaataaattgtt-agagattggttgaacattattttaattcatattgttttatcttattcatatttgattccattcatcataaattaccattcaaaca |
42750990 |
T |
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| Q |
126 |
acattgaaatattcacttcacaaactttgaagaacttgtacacaacacaacatgtccctttattgaaaacgggagaa |
202 |
Q |
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| T |
42750991 |
acattgaaatattcacttcacaaactttaaagaacttgtacacaacaaaacatgtccctttattgaaaacgggagaa |
42751067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 42741585 - 42741689
Alignment:
| Q |
77 |
ttttatcttattcatttgattccattcatcataaattaccattcaaacaacattgaaatattcacttcacaaactttgaagaacttgtacacaacacaac |
176 |
Q |
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| T |
42741585 |
ttttatcttattcatttgatttcactcaccataaattaccattaaaacaacattgatatattcacttcacaacctttgaagaacttgtacataatacaac |
42741684 |
T |
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| Q |
177 |
atgtc |
181 |
Q |
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||||| |
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| T |
42741685 |
atgtc |
42741689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 23042972 - 23042791
Alignment:
| Q |
19 |
atacgttataggaataaattgttgacagagtggttaaacattatcttatttcatgttgttttatcttattcatttgattccattcatcataaattaccat |
118 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23042972 |
atacgttataggaataaattga--atagagtggttaaacattattttatttcatattgttttatcttattcatttgattcaattcatcataaattaccat |
23042875 |
T |
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| Q |
119 |
tcaaacaacattgaaatattcacttcacaaactttgaagaacttgtacacaacacaacatgtccctttattgaaaacgggagaa |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23042874 |
tcaaacaacattgatatattcacttcacaaactttgaagaacttgtacacaacacaacatgtccctttattgaaaatgggagaa |
23042791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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