View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8540_low_4 (Length: 654)
Name: NF8540_low_4
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_4 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 218 - 654
Target Start/End: Complemental strand, 32467504 - 32467068
Alignment:
| Q |
218 |
taagagttgaaagtaagtcacgagcttctccaacatgtacatcataaatggagaaaatcattatgttgtgaaaggaggaaaaagaagtataatattacag |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32467504 |
taagagttgaaagtaagccacgagcttctccaacatgtacatcataaatggagaaaatcattatgttgtgaaaggaggaaaaagaagtataatattacag |
32467405 |
T |
|
| Q |
318 |
tttacccttcctggtgatggcttactccaactgacaacatgtcttccatcgaccatcatgagcattatcgttcaacaacataagattgagcagcaatcac |
417 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32467404 |
tttacccttcctgatgatggcttactccatctgacaacatgtcttccatcgaccatcatgagcattatcgttcaacaacataagattgagcagcaatcac |
32467305 |
T |
|
| Q |
418 |
agtattccatactatgttattcctttgcttccataaagtccatgcaaacagtgtagcttcttcaacaattatattttacgaaatatgaaagataatacct |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32467304 |
agtattccatactatgttattcctttgcttccataaagtccatgcaagcagtgtagcttcatcaacaattatattttacgaaatatgaaagataatacct |
32467205 |
T |
|
| Q |
518 |
gacacattcagactttgattcacgattgtattcataatagttgaaagagatcaaatttaccaaacataagagctattggaacatttnnnnnnncacatga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
32467204 |
gacacattcagactttgattcacgattgtattcataatagttgaaagagagcaaatttaccaaacattagagctattggaacatttaaaaaaacacatga |
32467105 |
T |
|
| Q |
618 |
agactctcctcattataaaacacatgaagactatccc |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32467104 |
agactctcctcattataaaacacatgaagactatccc |
32467068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 32467708 - 32467617
Alignment:
| Q |
10 |
acatcataaaaaatataaatgctatggtgagataaggaaactttaactattaaactatcttatttgtttgtcctctaacacaagcataacct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32467708 |
acatcataaaaaatataaatgctatggtgagataaggaaactttaactattaaactatcttatttgtttgtcctctaacacaagcataacct |
32467617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University