View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8540_low_7 (Length: 457)
Name: NF8540_low_7
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8540_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 39230415 - 39229980
Alignment:
| Q |
19 |
aagggtttataacttataaggtcgatggtttgaaataatcacaaaatgatgacttttattcttccgcaaactagaaacatttgcggttcaacataaatag |
118 |
Q |
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| T |
39230415 |
aagggtttataacttataaggtcgatggtttgaaataatcacaaaatgatgacttttattcttccgctaactagaaacatttgcggttcaacataaatag |
39230316 |
T |
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| Q |
119 |
aggtaaaaacggagtcacatccactcagcaatttcattaaacacgagaacaatttagtgtttcaattattcnnnnnnnnnnnnnnnnnnnctcctccgat |
218 |
Q |
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| T |
39230315 |
aggtaaaaacggagtcacatccactcagcaatttcattaaacacgagaacaatttcgtgtttcaattattcttttattttttatctttttctcctccgat |
39230216 |
T |
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| Q |
219 |
caaatttaaaaaattcttttggcaatcctaataatgataactcgaggtgcacatttttcccaataggcaggtaatagaacaatttaacattagagttgaa |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39230215 |
catatttaaaaaattcttttggcaatcctaataatgataactcgaggtgcacatttttcccaataggcaggtaatagaacaatttaacattagagttgaa |
39230116 |
T |
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| Q |
319 |
caaatactagcttatacttgcttctgaattagaagctactatattataaattctgggaaataccaccttcccatgcaacatcaaagacaacatggaaaga |
418 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39230115 |
caaatactagcttatacttgcttc--aattagaagctactatattataaattctgggaaataccaccttcccatgcaacatcaaagacaacatggaaaga |
39230018 |
T |
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| Q |
419 |
aagaaagnnnnnnnntcacagttgatttacatttcagaa |
457 |
Q |
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| T |
39230017 |
aagaaag-aaaaaaatcacagttgatttacatttcagaa |
39229980 |
T |
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