View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8540_low_8 (Length: 445)

Name: NF8540_low_8
Description: NF8540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8540_low_8
NF8540_low_8
[»] chr8 (22 HSPs)
chr8 (19-418)||(23232126-23232526)
chr8 (31-366)||(28374519-28374853)
chr8 (19-366)||(11648708-11649055)
chr8 (89-365)||(9382180-9382459)
chr8 (26-366)||(24190303-24190641)
chr8 (19-355)||(32073062-32073399)
chr8 (94-305)||(45117343-45117555)
chr8 (94-305)||(3762574-3762786)
chr8 (94-261)||(7263691-7263859)
chr8 (31-306)||(16729546-16729820)
chr8 (197-366)||(9137515-9137680)
chr8 (101-307)||(4432085-4432291)
chr8 (94-305)||(1981470-1981685)
chr8 (360-419)||(11648612-11648671)
chr8 (197-335)||(28509232-28509370)
chr8 (131-305)||(31597435-31597611)
chr8 (131-306)||(7972995-7973172)
chr8 (59-190)||(35824019-35824149)
chr8 (101-149)||(39906110-39906157)
chr8 (101-190)||(18327237-18327326)
chr8 (31-83)||(9137359-9137411)
chr8 (19-83)||(44149483-44149547)
[»] chr2 (38 HSPs)
chr2 (31-358)||(19091145-19091473)
chr2 (69-366)||(13597829-13598124)
chr2 (31-366)||(30386666-30387003)
chr2 (94-357)||(38566167-38566425)
chr2 (32-366)||(9057218-9057548)
chr2 (126-365)||(14903932-14904173)
chr2 (19-245)||(31549160-31549386)
chr2 (43-358)||(6882826-6883142)
chr2 (135-363)||(11199242-11199472)
chr2 (34-366)||(10022732-10023060)
chr2 (31-366)||(41302404-41302732)
chr2 (39-160)||(21573810-21573931)
chr2 (136-341)||(38422915-38423122)
chr2 (94-305)||(6221262-6221475)
chr2 (102-342)||(24484361-24484598)
chr2 (32-162)||(25621125-25621255)
chr2 (185-305)||(33054742-33054862)
chr2 (102-268)||(19685679-19685845)
chr2 (94-235)||(33015278-33015420)
chr2 (94-306)||(41825978-41826191)
chr2 (33-170)||(25424445-25424581)
chr2 (94-305)||(44314058-44314268)
chr2 (94-305)||(44322237-44322447)
chr2 (197-335)||(7880344-7880482)
chr2 (185-336)||(29303136-29303287)
chr2 (365-419)||(31549021-31549075)
chr2 (278-365)||(41422808-41422891)
chr2 (94-261)||(2553933-2554101)
chr2 (321-366)||(31549117-31549162)
chr2 (197-336)||(19678000-19678139)
chr2 (278-366)||(25621500-25621588)
chr2 (36-115)||(41423066-41423145)
chr2 (365-419)||(13597733-13597787)
chr2 (131-306)||(22575998-22576175)
chr2 (156-235)||(27861906-27861986)
chr2 (142-268)||(41422927-41423055)
chr2 (29-83)||(11199521-11199575)
chr2 (372-416)||(38422799-38422843)
[»] chr7 (27 HSPs)
chr7 (31-366)||(5770692-5771016)
chr7 (40-366)||(43179379-43179705)
chr7 (101-364)||(39038847-39039110)
chr7 (31-365)||(8113870-8114201)
chr7 (33-366)||(9420272-9420605)
chr7 (95-362)||(35118206-35118472)
chr7 (183-366)||(40934017-40934198)
chr7 (133-345)||(44733550-44733763)
chr7 (69-357)||(28460206-28460482)
chr7 (94-305)||(8389314-8389526)
chr7 (85-307)||(24441940-24442163)
chr7 (94-365)||(8604552-8604819)
chr7 (198-358)||(21863581-21863741)
chr7 (31-172)||(44733341-44733480)
chr7 (197-335)||(48636674-48636812)
chr7 (279-357)||(45446031-45446109)
chr7 (94-261)||(35478036-35478204)
chr7 (94-268)||(20394837-20395012)
chr7 (101-261)||(4539750-4539911)
chr7 (34-306)||(41822149-41822424)
chr7 (143-265)||(47522411-47522534)
chr7 (94-261)||(13753992-13754160)
chr7 (201-306)||(29636905-29637010)
chr7 (197-336)||(6189387-6189526)
chr7 (278-336)||(8069633-8069691)
chr7 (278-336)||(48238512-48238570)
chr7 (102-305)||(31072539-31072743)
[»] chr6 (17 HSPs)
chr6 (26-363)||(11680814-11681153)
chr6 (19-376)||(19107741-19108092)
chr6 (31-357)||(26817177-26817497)
chr6 (39-268)||(1603193-1603422)
chr6 (94-357)||(13758742-13759002)
chr6 (31-268)||(1131588-1131826)
chr6 (19-305)||(15059972-15060255)
chr6 (95-268)||(18675231-18675405)
chr6 (68-366)||(31129595-31129890)
chr6 (132-366)||(3229155-3229381)
chr6 (94-305)||(22012131-22012341)
chr6 (135-235)||(30358798-30358900)
chr6 (135-235)||(30359615-30359717)
chr6 (222-335)||(33516611-33516724)
chr6 (131-305)||(1422868-1423044)
chr6 (94-261)||(20990314-20990482)
chr6 (94-305)||(34043421-34043633)
[»] chr5 (32 HSPs)
chr5 (20-366)||(3654472-3654821)
chr5 (31-366)||(8806273-8806607)
chr5 (95-366)||(38915669-38915943)
chr5 (31-366)||(5121142-5121482)
chr5 (31-345)||(13820844-13821157)
chr5 (94-345)||(29149528-29149781)
chr5 (142-366)||(6769319-6769539)
chr5 (140-366)||(29789468-29789695)
chr5 (101-358)||(13826180-13826439)
chr5 (94-345)||(16040161-16040413)
chr5 (39-268)||(2676788-2677017)
chr5 (19-251)||(16686747-16686983)
chr5 (94-305)||(23962727-23962939)
chr5 (33-172)||(33922441-33922580)
chr5 (19-113)||(26401727-26401821)
chr5 (94-261)||(18888945-18889113)
chr5 (197-335)||(38491018-38491156)
chr5 (229-366)||(37134741-37134878)
chr5 (204-365)||(43171359-43171515)
chr5 (197-336)||(7850286-7850425)
chr5 (32-187)||(37134603-37134758)
chr5 (365-419)||(8806177-8806231)
chr5 (31-306)||(9409566-9409841)
chr5 (33-306)||(5578622-5578892)
chr5 (33-114)||(29789180-29789261)
chr5 (126-235)||(13490298-13490409)
chr5 (102-305)||(13382615-13382820)
chr5 (365-411)||(16040056-16040102)
chr5 (131-249)||(20892338-20892458)
chr5 (365-418)||(38915574-38915627)
chr5 (298-366)||(20891348-20891416)
chr5 (101-235)||(39537474-39537609)
[»] chr4 (29 HSPs)
chr4 (34-365)||(10141960-10142292)
chr4 (31-366)||(52458832-52459166)
chr4 (31-366)||(52460089-52460423)
chr4 (32-366)||(29282965-29283296)
chr4 (31-366)||(1843116-1843447)
chr4 (126-346)||(13957159-13957380)
chr4 (17-366)||(10373325-10373674)
chr4 (31-366)||(9921809-9922138)
chr4 (34-172)||(51758268-51758406)
chr4 (222-357)||(42512194-42512329)
chr4 (39-268)||(7413795-7414024)
chr4 (39-268)||(7459876-7460105)
chr4 (31-209)||(25200844-25201023)
chr4 (228-366)||(21320025-21320162)
chr4 (139-366)||(41509148-41509375)
chr4 (126-332)||(3665451-3665657)
chr4 (94-305)||(10095037-10095249)
chr4 (222-336)||(51337648-51337762)
chr4 (94-172)||(22594154-22594232)
chr4 (19-113)||(51891001-51891095)
chr4 (241-364)||(24611307-24611430)
chr4 (278-345)||(51890407-51890474)
chr4 (278-345)||(51890681-51890748)
chr4 (317-366)||(25201111-25201160)
chr4 (365-409)||(52459208-52459252)
chr4 (365-409)||(52460465-52460509)
chr4 (157-261)||(23935836-23935942)
chr4 (370-419)||(6830674-6830723)
chr4 (32-117)||(20152554-20152638)
[»] chr1 (23 HSPs)
chr1 (31-358)||(12027600-12027929)
chr1 (94-366)||(24185619-24185888)
chr1 (19-357)||(47397490-47397834)
chr1 (222-366)||(5509809-5509953)
chr1 (94-305)||(17967339-17967551)
chr1 (131-366)||(9023127-9023363)
chr1 (31-308)||(25094980-25095257)
chr1 (228-366)||(47559506-47559642)
chr1 (197-335)||(36296674-36296812)
chr1 (131-308)||(49229349-49229526)
chr1 (224-357)||(5209643-5209776)
chr1 (131-294)||(48646068-48646232)
chr1 (197-335)||(42722209-42722347)
chr1 (102-305)||(34307461-34307665)
chr1 (94-235)||(22070380-22070522)
chr1 (205-356)||(41665592-41665742)
chr1 (102-305)||(5049340-5049544)
chr1 (102-305)||(21906264-21906468)
chr1 (102-268)||(48999290-48999455)
chr1 (136-251)||(44310372-44310490)
chr1 (365-411)||(44310579-44310625)
chr1 (156-305)||(48596367-48596518)
chr1 (365-419)||(24185523-24185577)
[»] chr3 (26 HSPs)
chr3 (59-357)||(47184807-47185106)
chr3 (19-342)||(10993054-10993371)
chr3 (131-358)||(53472036-53472263)
chr3 (19-366)||(1424502-1424843)
chr3 (32-357)||(12892865-12893191)
chr3 (95-366)||(30191123-30191394)
chr3 (197-366)||(29713787-29713952)
chr3 (43-366)||(16876830-16877151)
chr3 (19-366)||(1698222-1698569)
chr3 (139-357)||(44663291-44663507)
chr3 (94-305)||(10994164-10994376)
chr3 (103-366)||(11639946-11640209)
chr3 (94-305)||(19156970-19157182)
chr3 (139-366)||(40145388-40145613)
chr3 (102-305)||(53076983-53077186)
chr3 (94-261)||(25071520-25071688)
chr3 (126-305)||(27941531-27941711)
chr3 (43-231)||(4127160-4127348)
chr3 (222-336)||(23044880-23044994)
chr3 (222-295)||(17147224-17147296)
chr3 (197-336)||(31884940-31885079)
chr3 (365-419)||(11830348-11830402)
chr3 (94-190)||(15760736-15760832)
chr3 (19-165)||(17147061-17147202)
chr3 (365-419)||(30191027-30191081)
chr3 (317-357)||(4127624-4127664)
[»] scaffold0178 (1 HSPs)
scaffold0178 (31-362)||(2387-2720)
[»] scaffold1266 (1 HSPs)
scaffold1266 (126-366)||(1219-1463)
[»] scaffold0263 (1 HSPs)
scaffold0263 (126-366)||(18553-18797)
[»] scaffold0160 (1 HSPs)
scaffold0160 (76-366)||(24980-25268)
[»] scaffold0116 (1 HSPs)
scaffold0116 (94-342)||(40693-40938)
[»] scaffold0002 (2 HSPs)
scaffold0002 (96-247)||(119420-119572)
scaffold0002 (279-366)||(98304-98391)
[»] scaffold0016 (2 HSPs)
scaffold0016 (101-235)||(87718-87852)
scaffold0016 (101-235)||(89144-89279)
[»] scaffold0743 (1 HSPs)
scaffold0743 (222-336)||(3287-3401)
[»] scaffold0552 (1 HSPs)
scaffold0552 (370-418)||(10176-10224)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 23232526 - 23232126
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23232526 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 23232427  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaattggtggtatttttt-gagccttttgtttctaatattgtgcct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  23232426 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaattggtggtatttttttgagccctttgtttctaatattgtgcct 23232327  T
Q  218 cgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaa 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23232326 cgccaatattaaaaatattggtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaa 23232227  T
Q  318 gaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattattgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatca 417  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23232226 gaaattaattttaatcttttctttcaaatgttccaaaaaattaaattattgcaaaattgaatttgataatgcagaatcatgtgaaacacattcatgatca 23232127  T
Q  418 t 418  Q
    |    
T  23232126 t 23232126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 31 - 366
Target Start/End: Complemental strand, 28374853 - 28374519
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttgg-cgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaa 129  Q
    |||||||| |||||||||||||||||||||||   |||||||| |||||||||| ||||| |  ||||||||||| ||||| || ||| | |||| ||||    
T  28374853 ggctgaagcctgttaatgtttttgaccctttttttcgtgatttgctatatatacccccgtttagcacaaagattt-tatatccatcctccttataaaaaa 28374755  T
Q  130 atttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttt-ttgagccttttgtttctaatattgtgcctcgccaatatt 227  Q
     ||||||||| |||||||||||||||||| ||  ||||| | | ||||||||| |||||| ||| | | |||||| |||| | |||| |||   ||||||    
T  28374754 ttttggttgtacttaataatgtgtcaaaatatc-atcattgtagaaattggtgatattttgttgggtcctttgttgctaagaatgtgtctcattaatatt 28374656  T
Q  228 aaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    ||||||||| ||||||||||||||| |||||||| | |||| |||||||||||| |||||||||||||| |||||||||||  ||||  ||||||||||     
T  28374655 aaaaatatt-gtgatatttattattcaagaaatttgaataattttataaccaaa-taaattatattttagttgaaaatgagtttactagagaaattaatc 28374558  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||| ||| |||||||| |||||||||||||||    
T  28374557 ttaatcttgttttttaaatgttcaaaaaaattaaattat 28374519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 11649055 - 11648708
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgac-ccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccct 117  Q
    ||||||||| |  ||||||||||||||||||||||    |||||||| | |||  ||||||||||| ||  |||| |||||  ||| ||||||||||| |    
T  11649055 gatgaaaggctgagctgaagtctgttaatgtttttttggccttttggggcgatactctatatatacccctatattccacaataatt-ctatatacaccat 11648957  T
Q  118 tcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcga-aaaattggtggtattttttgagccttttgtttctaatattgtgcc 216  Q
     | |||| ||||| |||||||||||||||||||||  ||||| ||||| ||||| |||||||||| |||||||||  || |||||| |||||| ||||||    
T  11648956 ccctataaaaaaaattggttgttcttaataatgtgctaaaaattttattatcgataaaattggtgatattttttggaccatttgttcctaataatgtgcc 11648857  T
Q  217 tcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactga 316  Q
    || | ||||||||||||||| ||||||||||||||  ||||||||  ||||| ||||||| ||||| ||||||||||||| |||||||||  |  | |      
T  11648856 tcactaatattaaaaatattggtgatatttattatcaaagaaattgagataattttataa-caaaacaaattatattttagttgaaaatggactcattag 11648758  T
Q  317 agaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||| | |||||||||||||||| |||||||| |||||||||||    
T  11648757 agaaattaatctcaatcttgtctttcaaaggttccaaataattaaattat 11648708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 89 - 365
Target Start/End: Complemental strand, 9382459 - 9382180
Alignment:
Q  89 tatttcacaaagatttctatatacacccttcatatagaaaaatttg--gttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtat 185  Q
    |||| |||||||||||||||| ||||||| | |||| ||||||| |  ||||||||||||||||||  |||||||| || ||| || ||||||||| |||    
T  9382459 tattgcacaaagatttctatacacaccctccctataaaaaaattggttgttgttcttaataatgtgctaaaaaatt-attatccaagaaattggtgatat 9382361  T
Q  186 ttttt-gagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaat 283  Q
    ||||| |  || ||| || |||||| ||||| || | ||||||||||||||| |||||||||| |||  ||  |||| |||||| ||| ||||| ||||     
T  9382360 ttttttgctccctttattcctaataatgtgcttcactaatattaaaaatattggtgatatttactatctaatgaattgggataattttcataac-aaaac 9382262  T
Q  284 aaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaatta 365  Q
    ||||||||||||| |||||||||  |||| |  | ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  9382261 aaattatattttagttgaaaatggacctattagaaaaattaattttaatcttttctttcaaaggttccaaaaaattaaatta 9382180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 26 - 366
Target Start/End: Complemental strand, 24190641 - 24190303
Alignment:
Q  26 ggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatag 125  Q
    |||| |||| ||||||||||||||| | |  | |||| ||| ||||| |||||||||| | |||||| ||||  |||||||||||||||| | | ||||     
T  24190641 ggttgggctcaagtctgttaatgttataggtcattttagcgagatttgctatatataccctcgtattacaca--gatttctatatacaccttccctataa 24190544  T
Q  126 aaaaa--tttggttgttcttaataatgtgtcaaaaaatttatcatcg-aaaaattggtggtattttttgagcct-tttgtttctaatattgtgcctcgcc 221  Q
    |||||  |||| || |||||||||||||| ||||||||||||||| | ||||||||| | ||||||||  | || ||||||  ||||||| ||||||       
T  24190543 aaaaaagtttgatttttcttaataatgtgccaaaaaatttatcatgggaaaaattggagatatttttttgggctctttgttcataatattatgcctcagt 24190444  T
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    |||||||||||||||  |||||||||||||  |||||||| |||||| ||| ||||| |||| ||||||||||||| ||||||||||| ||||    |||    
T  24190443 aatattaaaaatattgatgatatttattatccaagaaattgggataatttttataac-aaaacaaattatattttagttgaaaatgagtctac----gaa 24190349  T
Q  321 attaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
     ||||| ||||| ||||||||| |  ||| ||||||| ||||||||    
T  24190348 gttaatcttaattttgtctttctatggtttcaaaaaaataaattat 24190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 32073062 - 32073399
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    |||||| ||||  |||||||| ||||| |||||||| |  ||||| ||||||||||||||||||| |||||||  |||||| ||||| ||||| ||||      
T  32073062 gatgaagggttgagctgaagtttgttattgtttttggcatttttgacgtgattttctatatatacccccgtataacacaaatatttcaatatataccccc 32073161  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcct 217  Q
     |||||      ||| | |||||||||||| ||| ||||||||| || ||| || ||||| ||| ||||||||||||| ||| ||||||||| |||| ||    
T  32073162 aatataattttttttaggtgttcttaataacgtgccaaaaaatt-attatccaagaaatttgtgatattttttgagcccttt-tttctaataatgtgtct 32073259  T
Q  218 cgccaatattaaaaatattagtgatatttattattgaagaaattaggataa-ctttataaccaaaataaattatattttaattgaaaatg--agcctact 314  Q
    | | ||||||||||||||| ||||||||||||||  ||||||||  ||||| ||||  || |||||  |||||||||||| |||||||||    | || |    
T  32073260 cactaatattaaaaatattggtgatatttattatccaagaaattgtgataatctttgcaa-caaaacgaattatattttagttgaaaatggacacatatt 32073358  T
Q  315 gaagaaattaattttaatcttgtctttcaaatgttccaaaa 355  Q
      |||||||||| ||||||||||| |||||| |||||||||    
T  32073359 agagaaattaatcttaatcttgtcgttcaaaggttccaaaa 32073399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 45117343 - 45117555
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-g 191  Q
    |||||| ||||||||||||||||| | |||| ||| |||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| |||||||| |    
T  45117343 cacaaaaatttctatatacaccctcc-tataaaaatatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 45117441  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| ||||| |||| ||||||||||||||    ||||||||||||  |||||||| |||||| ||| |||| ||||  |||||||    
T  45117442 ggccctttgttcctaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcataa-caaagcaaattat 45117540  T
Q  291 attttaattgaaaat 305  Q
    |||||| ||||||||    
T  45117541 attttagttgaaaat 45117555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 3762574 - 3762786
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||| ||||||| | |||| |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || |||||||    
T  3762574 cacaaatatttctatacacaccctcc-tataaaaaaatttggttgttcttgataatatgcttaaaaatttattatcgaagaaattggtgatatttttttg 3762672  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| ||||  || | ||||||||||||||    ||||||||||||  |||||||| |||||| ||| |||| ||||  ||||| |    
T  3762673 ggccctttgttcctaataatgtgtttcactaatattaaaaatatctacgatatttattatccaagaaattgggataattttcataa-caaagcaaattct 3762771  T
Q  291 attttaattgaaaat 305  Q
    |||||| ||||||||    
T  3762772 attttagttgaaaat 3762786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 7263859 - 7263691
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttt-ttg 191  Q
    |||||| ||||||||||||||||| | |||| ||||| |||||||||||||||||| |||   ||||||||| |||||| ||||| ||| |||||| |||    
T  7263859 cacaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttaataatatgtttgaaaatttattatcgaagaaattagtgatattttattg 7263761  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
     ||| ||||||  ||||| ||||| |||| ||||||||||||||    ||||||||||||  ||||||||    
T  7263760 ggccctttgttcttaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaatt 7263691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 306
Target Start/End: Original strand, 16729546 - 16729820
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||| |||||||||||||||| ||||||| | | ||||| |||||||||  ||| |    |||||| ||||||||||||||||| | |||| |||||    
T  16729546 ggctgaaatctgttaatgtttttggcccttttagagagatttgctatatatat-cccatgcagcacaaaaatttctatatacaccctcc-tataaaaaaa 16729643  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    || ||||||| |||||||| ||    ||||||||| |||||| ||||||||| |||||||| | ||| ||| ||  ||||| ||||| || | |||||||    
T  16729644 tt-ggttgtttttaataatatgctcgaaaatttattatcgaagaaattggtgatatttttttgggcccttttttcttaataatgtgcttcactaatatta 16729742  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatg 306  Q
    |||||||    ||||||||||||  |||||||| |||||| ||| | | ||||  ||||| ||||||| |||||||||    
T  16729743 aaaatatcgacgatatttattatccaagaaattgggataattttcttaacaaagcaaattctattttagttgaaaatg 16729820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 366
Target Start/End: Original strand, 9137515 - 9137680
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt-aggataacttt-ataaccaaaataaattatattt 294  Q
    |||||| |||||| |||| ||| | ||||||||||||||| ||||||||||||||  ||||||||  |||||| ||| |||| ||||| |||||||||||    
T  9137515 tttgttcctaataatgtgtctcactaatattaaaaatattggtgatatttattatccaagaaattgtggataattttcataa-caaaacaaattatattt 9137613  T
Q  295 taattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    || ||||||||||||||| ||     |||||| ||||||||||||||| || |||| |||||| | ||||||    
T  9137614 tagttgaaaatgagccta-tg----tattaatcttaatcttgtctttctaaggttcaaaaaaaattaattat 9137680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 307
Target Start/End: Complemental strand, 4432291 - 4432085
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagcctttt 199  Q
    ||||||||||||||||| | |||| |||||||||||||||||||| ||| ||     |||||||| |||||| |||||| || || |||||| ||| |||    
T  4432291 atttctatatacaccctcc-tataaaaaaatttggttgttcttaaaaatatgctcggaaatttattatcgaagaaattgatgatagtttttgggccgttt 4432193  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaat 298  Q
    ||| |||||| ||| | || | |||||||||||||||    |||||||||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| |    
T  4432192 gttcctaataatgtacttcactaatattaaaaatattgacaatatttattatccaagaaattgggataattttcataa-caaagcaaattttattttagt 4432094  T
Q  299 tgaaaatga 307  Q
    |||||||||    
T  4432093 tgaaaatga 4432085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 1981470 - 1981685
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtg-tc--aaaaaatttatcatcgaa-aaattggtggta-tttt 188  Q
    |||||| |||||||||||||||| || |||| |||||||||||||||||| || || || ||  ||||||| ||| |||||| ||||||||| || ||||    
T  1981470 cacaaatatttctatatacaccc-tcctataaaaaaatttggttgttcttgattatatgctcaaaaaaaatgtattatcgaagaaattggtgatattttt 1981568  T
Q  189 ttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaat 287  Q
    ||| ||  |||||| |||||| ||||| ||   |||||||||||||||   ||||||||||||  |||||||| |||||| ||| |||| ||||  ||||    
T  1981569 ttgggctctttgttcctaataatgtgcttcattaatattaaaaatattgacgatatttattatccaagaaattgggataattttcataa-caaagcaaat 1981667  T
Q  288 tatattttaattgaaaat 305  Q
    | ||||||| ||||||||    
T  1981668 tctattttagttgaaaat 1981685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 11648671 - 11648612
Alignment:
Q  360 aaattattgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    |||| |||||||||||||||||||||||||| ||||||| || ||||||||| |||||||    
T  11648671 aaatgattgcaaaattgaatttgataatgcaaaatcatgcgagacacattcatgatcatg 11648612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 28509232 - 28509370
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  ||||||||| || ||| ||||| |||| ||||||||||||    
T  28509232 tttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattaggagaattttcataac-aaaacaaattatatttt 28509330  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatctt 335  Q
    | ||||||||| |||||||  | |||||||| ||||||||    
T  28509331 agttgaaaatgggcctactagaaaaattaatcttaatctt 28509370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 305
Target Start/End: Original strand, 31597435 - 31597611
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || ||||||| ||| |||  | |||||| ||||| || | |||||||    
T  31597435 tttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgggccctttactcctaataatgtgcttcactaatatta 31597534  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaat 305  Q
    |||||||    ||||||||||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| ||||||||    
T  31597535 aaaatatcgacgatatttattatccaagaaattgggataattttcataa-caaagcaaattctattttagttgaaaat 31597611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 306
Target Start/End: Complemental strand, 7973172 - 7972995
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt--gagccttttgtttctaatattgtgcctcgccaatatt 227  Q
    ||||||||||||||||||| ||   |||||||||| |||||| |||||  || ||||||||  || || ||||||||||||| ||||| || | ||||||    
T  7973172 tttggttgttcttaataatatgctcaaaaatttattatcgaagaaattaatgatatttttttggatcc-tttgtttctaataatgtgcttcactaatatt 7973074  T
Q  228 aaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatg 306  Q
    ||||||||    ||||||| ||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| |||||||||    
T  7973073 aaaaatatcgacgatattttttatccaagaaattgggataattttcataa-caaagcaaattctattttagttgaaaatg 7972995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 35824019 - 35824149
Alignment:
Q  59 ttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaa 158  Q
    ||||||| |||||| |||||||||| ||| |||  |||| | ||||| ||||||||| | | |||| |||| | |||||||||||||||||||| |||||    
T  35824019 ttttggcatgatttgctatatatac-cccttataacacacaaatttccatatacaccttccctatacaaaa-tgtggttgttcttaataatgtgccaaaa 35824116  T
Q  159 aatttatcatc-gaaaaattggtggtatttttt 190  Q
     | |||| |||  ||||||||||| ||||||||    
T  35824117 gaattattatcaaaaaaattggtgatatttttt 35824149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 39906110 - 39906157
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataat 149  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  39906110 atttctatataccccct-catataaaaaaatttggttgttcttaataat 39906157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 18327237 - 18327326
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt 190  Q
    ||||||||||||||||| | |||| ||||| || ||||||||||||||| ||   |||||||||| |||||| |||||| || ||||||||    
T  18327237 atttctatatacaccctcc-tataaaaaaaattagttgttcttaataatatgctcaaaaatttattatcgaagaaattgatgatatttttt 18327326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 9137359 - 9137411
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatac 83  Q
    |||| |||||||||||||||||  |||||||||| | ||||| ||||||||||    
T  9137359 ggctcaagtctgttaatgttttaaacccttttggtgagatttactatatatac 9137411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 44149547 - 44149483
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatac 83  Q
    |||| |||||| |||| |||||||||||||||||  ||||||||| |  ||||| ||||||||||    
T  44149547 gatggaaggttgggctcaagtctgttaatgttttatacccttttgacaagatttactatatatac 44149483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 31 - 358
Target Start/End: Complemental strand, 19091473 - 19091145
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||||||||||||| |||||| |  |||||||   ||||||||||||||| |||||||  |||||| ||||||||||||||| ||  |||||||||     
T  19091473 ggctgaagtctgttaatatttttggcgattttggcacaattttctatatatacccccgtatagcacaaatatttctatatacaccattactatagaaaa- 19091375  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaa-ttggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| || |||||||| | ||| |||||| |||||| ||||||||   |||||||    
T  19091374 tttggttgttcttaataatgtgtcaaaaaatttattatcgaaaaaattgatgatatttttttgggccctttgttcctaataatgtgcctcaataatatta 19091275  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    |||||||| ||||||||||||||  |||||||| | |||| ||| ||||| |||| ||||||||||||| ||||||||| |||||||  ||||||||||     
T  19091274 aaaatattggtgatatttattatctaagaaatttgtataattttcataac-aaaacaaattatattttagttgaaaatgggcctactagagaaattaatc 19091176  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaat 358  Q
    |||||||| ||||||||| ||| ||||||||    
T  19091175 ttaatcttatctttcaaaggtttcaaaaaat 19091145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 69 - 366
Target Start/End: Complemental strand, 13598124 - 13597829
Alignment:
Q  69 attttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcat 168  Q
    |||||||||||| || ||||||| | ||||| ||||||||||||||||| | |||| || | | |||||||| ||||||||||| |||||||||||| ||    
T  13598124 attttctatatacac-cccgtatat-acaaatatttctatatacaccctccctataaaagactctggttgtttttaataatgtgccaaaaaatttattat 13598027  T
Q  169 cgaaaaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggata 267  Q
    ||||||||||||| || ||||||| |||||||  |  ||||| |||||||||| ||||||||||||||| || |||||||||||  |||||| | |||||    
T  13598026 cgaaaaattggtgatatttttttgggccttttactcttaataatgtgcctcgctaatattaaaaatattggtcatatttattatccaagaaaatgggata 13597927  T
Q  268 actttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    | ||||||| ||||| ||||||||||||| |||||||||| |||||| |  |||||||| ||||||||||| || ||| | ||||||||||| ||||||    
T  13597926 attttataa-caaaacaaattatattttagttgaaaatgaacctactaagcaaattaatattaatcttgtcatttaaaggatccaaaaaatttaattat 13597829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 366
Target Start/End: Original strand, 30386666 - 30387003
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||||  |||||||| |||||  |||||| || ||||||  |||||||||  || | |  ||||||  |||||||||||||||| | |||| ||| |    
T  30386666 ggctgaagcttgttaatggttttggtcctttttgcatgatttgttatatataccgccatttagcacaaaattttctatatacaccctccctatacaaaga 30386765  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatt--ttttgagccttttgtttctaatattgtgcctcgccaatatt 227  Q
    |||||||||||||||||||||| ||||| || ||| || ||| ||||| ||| ||||  |||||  |  |||||| |||||| |||| ||| | ||||||    
T  30386766 tttggttgttcttaataatgtgccaaaatatatattattgaagaaatttgtgatattaattttggactatttgttcctaataatgtgtctcactaatatt 30386865  T
Q  228 aaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    ||||||||  ||||||||||||||  ||||||||||||||| |||||||| |||| ||||||||||||| || |||||| || ||||  | ||||||||     
T  30386866 aaaaatatcggtgatatttattatccaagaaattaggataattttataac-aaaacaaattatattttagttaaaaatgggcttactagataaattaatc 30386964  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  30386965 ttaatcttgtcttttaaaggttccaaaaaattaaattat 30387003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 94 - 357
Target Start/End: Complemental strand, 38566425 - 38566167
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-g 191  Q
    |||||||||||||||||||||||| | |||| |||||||  ||| |||||||||||||||||||||| |||| |||||| ||||| | | |||||||| |    
T  38566425 cacaaagatttctatatacaccctccctataaaaaaatt--gtttttcttaataatgtgtcaaaaaaattattatcgaagaaattagcgatatttttttg 38566328  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| ||||| || | ||||||||||||||| ||||||||||||||  |||||||| |||||| ||| ||||| |||| |||||||    
T  38566327 ggccatttgttcctaataatgtgcgtcactaatattaaaaatattggtgatatttattatccaagaaattgggataattttcataac-aaaacaaattat 38566229  T
Q  291 attttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    |||||| |||||| ||||||||     ||||||||| ||||||||||||||| || ||| |||||||    
T  38566228 attttagttgaaa-tgagcctag----gaaattaatcttaatcttgtctttctaaggtttcaaaaaa 38566167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 32 - 366
Target Start/End: Original strand, 9057218 - 9057548
Alignment:
Q  32 gctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaat 131  Q
    ||||||||||||||||||| | | |||||||| |   |||| |||||||||||||| | | | ||||||||||||||||||||||| | |||| ||   |    
T  9057218 gctgaagtctgttaatgttatgg-cccttttgtctcaatttgctatatatacacccttttat-acaaagatttctatatacaccctccctata-aatttt 9057314  T
Q  132 ttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagcct-tttgtttctaatattgtgcctcgccaatattaa 229  Q
    |||||| ||||||||| |||| ||||| ||| || |||||| |||||  || ||||||||  | || ||||||||||||| |||||||| | || |||||    
T  9057315 ttggtttttcttaatattgtgccaaaatatt-attatcgaataaatttatgatatttttttggtctctttgtttctaataatgtgcctcactaaaattaa 9057413  T
Q  230 aaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatttt 329  Q
    | ||||| || |||||||||||  ||||||||  ||||| ||||||  ||||| ||||||||||||||||||| || ||  ||||  |||||||||| ||    
T  9057414 atatattggtcatatttattatccaagaaattgagataattttata--caaaacaaattatattttaattgaatataagtttactagagaaattaatctt 9057511  T
Q  330 aatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||| |||||||||||| ||||||||||||||||||||    
T  9057512 aatattgtctttcaaaggttccaaaaaattaaattat 9057548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 126 - 365
Target Start/End: Original strand, 14903932 - 14904173
Alignment:
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaa 223  Q
    ||||| ||||||||||||||||||||| ||||||| |||| |||||| ||||| ||| |||||||| | |||  || || |||||| ||||| || | ||    
T  14903932 aaaaaattggttgttcttaataatgtgccaaaaaaattattatcgaagaaatttgtgatatttttttgggcccattattcctaataatgtgcttcactaa 14904031  T
Q  224 tattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaat 322  Q
    ||||||||||||| ||||||||||||||  ||  ||||||||||| ||| || || |||| ||||||||||||| ||||||||   ||||||  | ||||    
T  14904032 tattaaaaatattcgtgatatttattatccaatgaattaggataattttcatgac-aaaacaaattatattttagttgaaaatagacctactagaaaaat 14904130  T
Q  323 taattttaatcttgtctttcaaatgttccaaaaaattaaatta 365  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||    
T  14904131 taattttaatcttgtctttcaaaggttacaaaaaaataaatta 14904173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 31549386 - 31549160
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    ||||||||||| |||||||  |||||||| |||||  |||||||| ||||||||  |  |||||| ||| ||| ||||||||||||||| || | |||||    
T  31549386 gatgaaaggttgggctgaaacctgttaatattttttgcccttttgacgtgatttgttg-atatacccccatatatcacaaagatttctacatgctccctt 31549288  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcc 216  Q
    | |||| ||| ||||||||||||||||||||||| ||||||| |||| || ||| ||||||||| || ||||||| ||| |||||| |||||| ||||||    
T  31549287 cctataaaaacatttggttgttcttaataatgtg-caaaaaaattattattgaagaaattggtgatatttttttgggccatttgttcctaataatgtgcc 31549189  T
Q  217 tcgccaatattaaaaatattagtgatatt 245  Q
    || | ||||||||||||||| ||||||||    
T  31549188 tcactaatattaaaaatattggtgatatt 31549160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 358
Target Start/End: Original strand, 6882826 - 6883142
Alignment:
Q  43 ttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttct 142  Q
    |||||||||||| |||||||| |  ||||| |||| ||||| | | |||  ||||||||||| || ||||||| | |   || ||||| |||||||||||    
T  6882826 ttaatgtttttggcccttttgacacgatttgctatgtatacccacatatagcacaaagatttttacatacaccatccccgta-aaaaaattggttgttct 6882924  T
Q  143 taataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtga 241  Q
    |||||||||| |||||||  ||| ||| || ||||||||| ||||||||| ||| ||||||  ||||| |||| ||| | ||||||||||||||| ||||    
T  6882925 taataatgtgccaaaaaa-atattatcaaagaaattggtgatattttttgggccatttgttcttaataatgtgtctcacaaatattaaaaatattggtga 6883023  T
Q  242 tatttattattgaagaaattaggataacttt-ataac-caaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtct 339  Q
    || |||||||  ||||||||  ||||| ||| |||||  |||| ||||||||||||| |||||||   |||||||  |||||||||| |||||||||| |    
T  6883024 tacttattatccaagaaattgagataattttcataacaaaaaaaaaattatattttagttgaaaacatgcctacttgagaaattaatcttaatcttgttt 6883123  T
Q  340 ttcaaatgttccaaaaaat 358  Q
    || ||| ||||||||||||    
T  6883124 tttaaaggttccaaaaaat 6883142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 363
Target Start/End: Complemental strand, 11199472 - 11199242
Alignment:
Q  135 gttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatattaaaaa 232  Q
    ||||||||||||||| ||  ||||||||||| |||||| ||||| ||| |||||||| | |||||||||| |||||| ||||||||   |||||||||||    
T  11199472 gttgttcttaataatatgctaaaaaatttattatcgaagaaattagtgatatttttttgggccttttgttcctaataatgtgcctcattaatattaaaaa 11199373  T
Q  233 tattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaat 332  Q
    |||   |||||||||||||  ||||||||  ||| | |||  || ||||| ||||| ||||||| ||||||||| || ||||  |||||||||| |||||    
T  11199372 tatcgatgatatttattatgcaagaaattgagatgattttcaaagcaaaacaaattctattttagttgaaaatgggcatactagagaaattaatcttaat 11199273  T
Q  333 cttgtctttcaaatgttccaaaaaattaaat 363  Q
    ||||| |||||||  || ||||||| |||||    
T  11199272 cttgtttttcaaagatttcaaaaaaataaat 11199242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 34 - 366
Target Start/End: Original strand, 10022732 - 10023060
Alignment:
Q  34 tgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaattt 133  Q
    |||||||||||||||||||||||| |||||| | ||||| |||||  ||| || |||  ||||||   |||||||||||| ||| | ||   ||||| ||    
T  10022732 tgaagtctgttaatgtttttgacctttttggtgcgatttgctataattacccctgtacatcacaat--tttctatatacatcctcccta---aaaaaatt 10022826  T
Q  134 ggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaa 232  Q
    ||||||| ||| |||| |||||||||| |||| |||||| ||||| ||| ||||||||| | |  ||||| |||||| |||||||| | ||||| |||||    
T  10022827 ggttgttattattaatatgtcaaaaaaattattatcgaataaattagtgatattttttgggaccattgttcctaataatgtgcctcactaatataaaaaa 10022926  T
Q  233 tattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaa 331  Q
    |||| | ||||||||||||  ||||||||  ||||| ||| |||| ||||| ||| ||||||||| |||||| ||    ||||  |||||||||| ||||    
T  10022927 tattggggatatttattatccaagaaattgagataattttcataa-caaaacaaaatatattttagttgaaagtggttttactagagaaattaatcttaa 10023025  T
Q  332 tcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    || ||||||| ||| ||| |||||||  |||||||    
T  10023026 tcatgtcttttaaaggtttcaaaaaaacaaattat 10023060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 366
Target Start/End: Complemental strand, 41302732 - 41302404
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    |||| |||| |||||||||||| | ||||||||||  ||||| |||||||||| | | |||   ||| |||||| ||||   ||||| | |||| |||||    
T  41302732 ggcttaagtttgttaatgttttaggcccttttggcaagatttgctatatataccctcatataa-acagagatttttata---accctccctata-aaaaa 41302638  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    |||| || ||||| |||||||| |||||||||||| |||||| ||||| | | ||||||| | ||| ||||||  ||||| |||||||| | |||||||     
T  41302637 tttgatttttctttataatgtgccaaaaaatttattatcgaagaaatttgcgatatttttagggccctttgttcgtaataatgtgcctcactaatattac 41302538  T
Q  230 aaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaatt-gaaaatgagcctactgaagaaattaatt 327  Q
    |||||||  |||||||||||||  || ||||| |||||| ||| ||||| |||| ||||||||||||| ||  |||||||||||||    |||||| ||     
T  41302537 aaatattgttgatatttattatccaaaaaattgggataattttcataac-aaaacaaattatattttagttcaaaaatgagcctac----gaaattgatc 41302443  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||||||||| ||  |||||||||| ||||||||    
T  41302442 ttaatcttgtctttctaagattccaaaaaaataaattat 41302404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 21573810 - 21573931
Alignment:
Q  39 tctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttg 138  Q
    |||||| ||||||||  ||||||||| | |||||  ||||| ||| |||||||  |||||||||||||||||||||||| | | || |||||||||||||    
T  21573810 tctgtttatgttttttgcccttttggggagatttgttatatgtacccccgtatagcacaaagatttctatatacaccctccctgtaaaaaaatttggttg 21573909  T
Q  139 ttcttaataatgtgtcaaaaaa 160  Q
    |||||||||||||| |||||||    
T  21573910 ttcttaataatgtgccaaaaaa 21573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 341
Target Start/End: Complemental strand, 38423122 - 38422915
Alignment:
Q  136 ttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtat-tttttgagccttttgtttctaatattgtgcctcgccaatattaaaaat 233  Q
    ||||||| ||||||||| ||| |||||||||||| || ||||||||| ||| |||||| ||| |||||| |||||| |||||||| | |||  |||||||    
T  38423122 ttgttctaaataatgtgccaagaaatttatcatccaagaaattggtgatatatttttgggccctttgttcctaataatgtgcctcactaattataaaaat 38423023  T
Q  234 attagtgatatttattattgaagaaattaggataa-ctttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaat 332  Q
    |||  |||||||||||||  ||||||||  || || ||| |||| ||||| |||| |||||||| |||||||||||| ||||  |||||| ||| | |||    
T  38423022 attgatgatatttattatccaagaaattgagagaatcttcataa-caaaacaaatgatattttagttgaaaatgagcatacttgagaaataaatctcaat 38422924  T
Q  333 cttgtcttt 341  Q
    ||| |||||    
T  38422923 cttttcttt 38422915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 6221262 - 6221475
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaa-atttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttg 191  Q
    |||||| ||||||||||||||||| | |||| |||| |||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| ||||||||     
T  6221262 cacaaatatttctatatacaccctcc-tataaaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatattttttt 6221360  T
Q  192 a-gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaatta 289  Q
    | |||||||||| |||||| ||||| ||   ||||||||||||||    ||||||||||||  ||||||| ||||||| ||| |||| |||| ||||||     
T  6221361 aggccttttgttcctaataatgtgcttcattaatattaaaaatatctacgatatttattatccaagaaatgaggataattttcataa-caaagtaaattc 6221459  T
Q  290 tattttaattgaaaat 305  Q
    ||||||| || |||||    
T  6221460 tattttagttaaaaat 6221475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 342
Target Start/End: Original strand, 24484361 - 24484598
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaattggtggta-ttttttgagccttttg 200  Q
    ||||||||| |||||| | |||| ||||| |||||| |||||||||||| |  |||||| |||| |||||||  ||  | |   ||||||| ||||||||    
T  24484361 tttctatatgcaccctccctataaaaaaaattggtttttcttaataatgggctaaaaaaattattatcgaaattttttttgacgttttttgggccttttg 24484460  T
Q  201 tttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttata-accaaaataaattatattttaatt 299  Q
    || |||||| |||||||  | ||||||||||||||| ||||||||||||||  ||||||||   |||| |||| | | ||||| ||||||||||||| ||    
T  24484461 ttcctaataatgtgcctaactaatattaaaaatatttgtgatatttattatccaagaaattgaaataa-tttacataacaaaacaaattatattttagtt 24484559  T
Q  300 gaaaatgagcctactgaagaaattaattttaatcttgtctttc 342  Q
    ||||||||| | ||     |||||||| |||||||||||||||    
T  24484560 gaaaatgaggcaac----aaaattaatcttaatcttgtctttc 24484598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 25621125 - 25621255
Alignment:
Q  32 gctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaa-a 130  Q
    |||||| ||| ||||||| |||| ||||||| | | ||||| |||||| ||| |||||||  |||| |||||||||||| |||||| ||||||||||| |    
T  25621125 gctgaaatctattaatgtgtttggcccttttagtgcgatttgctatatgtac-cccgtatagcacagagatttctatattcaccctccatatagaaaata 25621223  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatt 162  Q
    |||| | |||||||||||||| ||||||||||    
T  25621224 tttgatcgttcttaataatgtatcaaaaaatt 25621255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 33054742 - 33054862
Alignment:
Q  185 ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaat 283  Q
    ||||||| ||| |||||| |||||| ||||| || | ||||||||||||||| ||||||||||||||  || |||||| ||||| ||| |||| |||||     
T  33054742 ttttttgggccctttgttcctaataatgtgcttcactaatattaaaaatattggtgatatttattatccaataaattatgataattttcataa-caaaac 33054840  T
Q  284 aaattatattttaattgaaaat 305  Q
    ||||||||||||| ||||||||    
T  33054841 aaattatattttagttgaaaat 33054862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 268
Target Start/End: Original strand, 19685679 - 19685845
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagcctttt 199  Q
    |||||||||||||||| | |||| |||||||||||||||||| ||||| ||  ||||||||||| |||||| ||||||||| || ||||||| ||| |||    
T  19685679 tttctatatacaccctcc-tata-aaaaatttggttgttcttgataatatgctaaaaaatttattatcgaagaaattggtgatatttttttgggcccttt 19685776  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataa 268  Q
    | | |||||| ||||| || | ||||||||| ||||    ||||||||||||  |||||||| ||||||    
T  19685777 gctcctaataatgtgcttcactaatattaaacatatcgacgatatttattatccaagaaattgggataa 19685845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 33015420 - 33015278
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| |||||||||||||||| || |||| ||||||||| |||||||| ||||| ||   |||||||||| |||||| ||||||||| || |||||||    
T  33015420 cacaaatatttctatatacaccc-tcctataaaaaaatttgcttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 33015322  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatat 235  Q
     ||| |||||||||||||  |||| ||   ||||||||||||||    
T  33015321 ggccctttgtttctaataaagtgcttcattaatattaaaaatat 33015278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 94 - 306
Target Start/End: Complemental strand, 41826191 - 41825978
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||||||||||| | |||| ||||| |||||||||||||||||| ||    ||||||||| |||||| ||||| ||| || |||||||    
T  41826191 cacaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttaataatatgcttgaaaatttattatcgaagaaattagtgatatttttttg 41826093  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| ||||||  ||||| ||||| || | ||||||||||||||    ||||||||||||  ||||||||  ||||| ||| || | ||||| ||||| |    
T  41826092 ggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcatta-caaaacaaattct 41825994  T
Q  291 attttaattgaaaatg 306  Q
    |||||| |||||||||    
T  41825993 attttatttgaaaatg 41825978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 25424581 - 25424445
Alignment:
Q  33 ctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatt 132  Q
    |||||||||||||||||||||| || |||||||   | || |||||||||| ||| |||  |||| |||||||||||||||| |||  || | ||||| |    
T  25424581 ctgaagtctgttaatgtttttggcctttttggcacaacttgctatatataccccc-tatagcacacagatttctatatacactctttttaaaaaaaaaat 25424483  T
Q  133 tggttgttcttaataatgtgtcaaaaaatttatcatcg 170  Q
    | ||||||||||||| |||| |||||| ||||| ||||    
T  25424482 tagttgttcttaatattgtgccaaaaattttattatcg 25424445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 44314268 - 44314058
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttga 192  Q
    |||||| ||||||||||||||||| | | || |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| | |||||||     
T  44314268 cacaaaaatttctatatacaccctcc-tgtaaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgat-ttttttgg 44314171  T
Q  193 gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattata 291  Q
    ||| |||||| |||||  ||||| ||   ||||||||||||||    ||||||||||||  ||||||||  ||||| ||| |||| ||||  ||||| ||    
T  44314170 gccctttgttcctaattatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcataa-caaagcaaattcta 44314072  T
Q  292 ttttaattgaaaat 305  Q
    ||||| ||||||||    
T  44314071 ttttagttgaaaat 44314058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 44322447 - 44322237
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttga 192  Q
    |||||| ||||||||||||||||| | | || |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| | |||||||     
T  44322447 cacaaaaatttctatatacaccctcc-tgtaaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgat-ttttttgg 44322350  T
Q  193 gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattata 291  Q
    ||| |||||| |||||  ||||| ||   ||||||||||||||    ||||||||||||  ||||||||  ||||| ||| |||| ||||  ||||| ||    
T  44322349 gccctttgttcctaattatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcataa-caaagcaaattcta 44322251  T
Q  292 ttttaattgaaaat 305  Q
    ||||| ||||||||    
T  44322250 ttttagttgaaaat 44322237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 335
Target Start/End: Complemental strand, 7880482 - 7880344
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  ||||| ||| || ||| ||||| |||| ||||||||||||    
T  7880482 tttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattttcataac-aaaacaaattatatttt 7880384  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatctt 335  Q
    | ||||||||| |||||||  |||||||||| ||||||||    
T  7880383 agttgaaaatgggcctactagagaaattaatcttaatctt 7880344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 336
Target Start/End: Original strand, 29303136 - 29303287
Alignment:
Q  185 ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaata 284  Q
    ||||| ||||| ||| || |||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  ||||| ||| || | ||  | ||||| |    
T  29303136 tttttggagccctttattcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctaagaacaaaaca 29303235  T
Q  285 aattatattttaattgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
    |||||||||||| ||||||||| |||||||  |||||||||| |||||||||    
T  29303236 aattatattttagttgaaaatgggcctactagagaaattaatcttaatcttg 29303287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 31549075 - 31549021
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||  |||||||    
T  31549075 attgcaaaattgaatttgataatgcacaatcatgcgaaacacattcgtgatcatg 31549021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 41422891 - 41422808
Alignment:
Q  278 caaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaatta 365  Q
    ||||||||||||||||||| ||||||||||||||    | |||||||||  ||||||||| |||| || ||||||||||| |||||||    
T  41422891 caaaataaattatattttagttgaaaatgagcct----atgaaattaatcataatcttgtatttctaaggttccaaaaaaataaatta 41422808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 2553933 - 2554101
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||||||||||| | |||| ||||| |||||||||||||||||| |     ||||||||| |||||| ||||| ||| || |||||||    
T  2553933 cacaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttaataatatacttgaaaatttattatcgaagaaattagtgatatttttttg 2554031  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
     ||| ||||||  ||||| ||||| || | ||||||||||||||    ||||||||||||  ||||||||    
T  2554032 ggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaatt 2554101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 31549162 - 31549117
Alignment:
Q  321 attaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  31549162 attaattttaatcttgtttttcaaaggttccaaaaaattaaattat 31549117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 19678000 - 19678139
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    ||||||||||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  ||||| ||| || | | ||||| |||| ||||||||||||    
T  19678000 tttgtttctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctcataac-aaaacaaattatatttt 19678098  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
    | ||||||||| | |||||  |||||||||| |||||||||    
T  19678099 agttgaaaatgggtctactagagaaattaatcttaatcttg 19678139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 366
Target Start/End: Original strand, 25621500 - 25621588
Alignment:
Q  278 caaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||| ||||||||||||| |||||||||  |||||   | |||||||| |||||||||||||| ||| ||| ||||||| ||||||||    
T  25621500 caaaacaaattatattttagttgaaaatggacctacaagataaattaatcttaatcttgtcttttaaaggtttcaaaaaaataaattat 25621588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 41423145 - 41423066
Alignment:
Q  36 aagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacc 115  Q
    ||||||||||||||||||| ||||||| ||| ||||| ||| ||||||   | |||  ||||||||||||||||||||||    
T  41423145 aagtctgttaatgtttttggccctttttgcgagatttgctagatataccttcatataacacaaagatttctatatacacc 41423066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 13597787 - 13597733
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    ||||||||||| |||||||||||||| ||||||| || ||||||||| |||||||    
T  13597787 attgcaaaattaaatttgataatgcaaaatcatgcgagacacattcatgatcatg 13597733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 306
Target Start/End: Complemental strand, 22576175 - 22575998
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||||||||||||||||||| ||   |||||||||| |||||| |||||  || |||||||| | ||| |||||| |||||| | |||||| | |||||||    
T  22576175 tttggttgttcttaataatatgctcaaaaatttattatcgaagaaattaatgatatttttttgggccctttgttcctaataatttgcctcactaatatta 22576076  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatg 306  Q
    |||||||    ||||||||||||  || ||||| |||||| ||| |||| ||||  ||||| ||||||| |||||||||    
T  22576075 aaaatatcgacgatatttattatccaaaaaattgggataattttcataa-caaagcaaattctattttagttgaaaatg 22575998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 27861986 - 27861906
Alignment:
Q  156 aaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatat 235  Q
    |||||||||| |||||| ||||||||| ||||||||| ||| |||||| |||||| ||| | || | ||||||||||||||    
T  27861986 aaaaatttattatcgaagaaattggtgatattttttgggccctttgttcctaataatgtacttcactaatattaaaaatat 27861906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 41423055 - 41422927
Alignment:
Q  142 ttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttt-tgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagt 239  Q
    ||||||||||| ||||||| |||| ||| || ||||||    ||||||| || ||| |||||| |||||| ||||| || | ||||||||||||||| ||    
T  41423055 ttaataatgtgccaaaaaaattattatcaaagaaattgacaatatttttatgggccctttgttcctaataatgtgcttcactaatattaaaaatattggt 41422956  T
Q  240 gatatttattattgaagaaattaggataa 268  Q
    ||||||||||||  |||||| | ||||||    
T  41422955 gatatttattatccaagaaactgggataa 41422927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 11199575 - 11199521
Alignment:
Q  29 taggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatac 83  Q
    ||||||||| ||||||| |||||||| |||||||  || ||||||||||||||||    
T  11199575 taggctgaaatctgttattgtttttggcccttttaacgagattttctatatatac 11199521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 38422843 - 38422799
Alignment:
Q  372 aattgaatttgataatgcagaatcatgtgaaacacattcaggatc 416  Q
    |||||||||||||||||||  ||||||||| ||||||||| ||||    
T  38422843 aattgaatttgataatgcaagatcatgtgagacacattcatgatc 38422799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 31 - 366
Target Start/End: Original strand, 5770692 - 5771016
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    |||| |||||||||||| |||| | ||||||||||| |||||  ||||||  | | |||||  |||||||||||||||||||||||||  || | |||||    
T  5770692 ggctcaagtctgttaatattttaggcccttttggcgagatttattatata--ccctcgtataacacaaagatttctatatacaccctttctacaaaaaaa 5770789  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttt-tgagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||||||| |||||||||||||| |||||||||||| |||||| ||||||| | ||||||| || ||| |||||| |||||| |||| ||| | |||||||    
T  5770790 tttggtttttcttaataatgtgccaaaaaatttattatcgaagaaattggcgatatttttatgggccctttgttcctaataatgtgtctcactaatatta 5770889  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattt 328  Q
    |||||||| ||||||||||||||  |||||||| |||||    ||||   |||||||||||||||||| ||||||||||||||||    ||||||||| |    
T  5770890 aaaatattggtgatatttattatccaagaaattgggata----tata---aaaataaattatattttagttgaaaatgagcctac----gaaattaatat 5770978  T
Q  329 taatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||||||| ||  |||||||| | ||||||||    
T  5770979 taatcttgtctttctaagtttccaaaagagtaaattat 5771016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 40 - 366
Target Start/End: Complemental strand, 43179705 - 43179379
Alignment:
Q  40 ctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgt 139  Q
    |||||| ||||||||||||||||| |  ||||| ||||||| || | ||||| ||||||||||||||||||||||||| | |||| |    ||| |||||    
T  43179705 ctgttagtgtttttgacccttttgacacgatttgctatataaacccgcgtatatcacaaagatttctatatacaccctgcctata-atcttttttgttgt 43179607  T
Q  140 tcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagcct-tttgtttctaatattgtgcctcgccaatattaaaaatatta 237  Q
    ||||| ||||||||||||||| |||| ||| || ||||| ||| |||||||| || || |||||| |||||| ||| |||| | |||||| |||||| |     
T  43179606 tcttactaatgtgtcaaaaaaattattatccaataaattagtgatatttttttaggctctttgttcctaataatgtacctcactaatattgaaaatactg 43179507  T
Q  238 gtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgt 337  Q
    ||||||||||||||  |||||||| |||||| |||||||| |||| ||||||||||||| || |||||||| ||| | || |||||||| |||||||| |    
T  43179506 gtgatatttattatccaagaaattgggataattttataac-aaaacaaattatattttagttaaaaatgagtctattaaaaaaattaatcttaatcttat 43179408  T
Q  338 ctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||| ||||  ||||||||||||||    
T  43179407 ctttcaaaggttctcaaaaattaaattat 43179379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 364
Target Start/End: Complemental strand, 39039110 - 39038847
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttt 198  Q
    ||||| ||||||||||| | |||  |||||||||||||||||| ||||||||  |||||| |||| ||| || ||||| ||| || ||||||| ||| ||    
T  39039110 atttcgatatacaccctccttattaaaaaatttggttgttctttataatgtg--aaaaaaattattatcaaagaaattagtgatagttttttgggccctt 39039013  T
Q  199 tgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaat 298  Q
    | || || ||| |||||||| | ||||||||||||||| |||||||||||| |  |||||||| |||||| |||   | ||||| ||||||||||||| |    
T  39039012 tattcctcataatgtgcctcactaatattaaaaatattggtgatatttattgtccaagaaattgggataattttcgtaacaaaacaaattatattttagt 39038913  T
Q  299 tgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaatt 364  Q
    | |||||| |||||||  | |||||||| |||||||||||| | ||| ||| ||||||||||||||    
T  39038912 taaaaatgggcctactagataaattaatcttaatcttgtctgttaaaggtttcaaaaaattaaatt 39038847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 365
Target Start/End: Complemental strand, 8114201 - 8113870
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    |||||||||||||||||||||||| ||||||| ||   |||| |||||| ||| ||| |||  |||||||||||||||||||||  ||| |||| |||||    
T  8114201 ggctgaagtctgttaatgtttttggcccttttagcacaatttgctatatgtaccccc-tataacacaaagatttctatatacacatttcctataaaaaaa 8114103  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    || ||||||||||||||||||| ||||||| |||| |||||| ||||||||| ||||||||  | |  || ||  ||  | ||||  ||   ||||||||    
T  8114102 tt-ggttgttcttaataatgtgccaaaaaaattattatcgaataaattggtgatatttttttggtccattattcttatcaatgtgtttcattaatattaa 8114004  T
Q  230 aaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattt 328  Q
    ||||||| ||||||||||||||  || || || || ||| ||| |||||   || ||||||||||||| |||||||| | ||||||  ||| |||||| |    
T  8114003 aaatattggtgatatttattatccaataagttggggtaattttcataac---aacaaattatattttagttgaaaataaacctactacagatattaatct 8113907  T
Q  329 taatcttgtctttcaaatgttccaaaaaattaaatta 365  Q
    |||| || ||||||||| |||| |||||| |||||||    
T  8113906 taatattttctttcaaaggttctaaaaaaataaatta 8113870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 33 - 366
Target Start/End: Original strand, 9420272 - 9420605
Alignment:
Q  33 ctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatt 132  Q
    |||||||||||||||| ||||| ||||| ||||  ||||| |||||||||| |||||||  |||||||||||||||||| |||| || | || ||||| |    
T  9420272 ctgaagtctgttaatgcttttggcccttatggcacgatttactatatatacccccgtatagcacaaagatttctatatataccc-tccttta-aaaaaat 9420369  T
Q  133 tggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatt-ttttgagccttttgtttctaatattgtgcctcgccaatattaaa 230  Q
    | ||||||||||| |||||| || ||||||||| ||| || |  |||||| |||| ||||| ||| ||| |   ||||  | ||||||   |||||| ||    
T  9420370 tagttgttcttaaaaatgtgccataaaatttattatcaaagagcttggtgatattgttttgggccctttttacataatgatatgcctcattaatatttaa 9420469  T
Q  231 aatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatttt 329  Q
    ||||||  ||| |||||||||  ||||||||||||| | ||| |||| ||||||||||| ||||||| |||||||||||  | ||  ||||| |||| ||    
T  9420470 aatattgttgaaatttattatccaagaaattaggattattttcataa-caaaataaattttattttagttgaaaatgagtttcctagagaaaataatctt 9420568  T
Q  330 aatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||||| |||  |||||||||| ||||||||    
T  9420569 aatcttgtcttttaaagattccaaaaaaataaattat 9420605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 95 - 362
Target Start/End: Complemental strand, 35118472 - 35118206
Alignment:
Q  95 acaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaa-attggtggtatttttt-ga 192  Q
    |||||||||||||||||||| || | |||| |||  ||| ||| |||||||||||||| ||||||| |||| ||| || | ||| ||| |||||||| |     
T  35118472 acaaagatttctatatacactctccctata-aaatttttagtttttcttaataatgtgccaaaaaaattattatccaatacatttgtgatatttttttgg 35118374  T
Q  193 gcc--ttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattat 290  Q
    |||  |||||||||||||| | | |||| | ||||||||| ||||| || |||||||||||  || |||||  || || |||||||| |||| |||||||    
T  35118373 gccctttttgtttctaataattt-cctcactaatattaaatatattggtcatatttattatccaataaatt--gagaattttataac-aaaacaaattat 35118278  T
Q  291 attttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaa 362  Q
    |||||| |||||||| |||||||| || |||||||| | ||| |||||||||||| ||||||||||||||||    
T  35118277 attttagttgaaaataagcctactaaaaaaattaatctgaatgttgtctttcaaaggttccaaaaaattaaa 35118206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 183 - 366
Target Start/End: Original strand, 40934017 - 40934198
Alignment:
Q  183 tattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaa 282  Q
    ||||||||| ||| |||| | |||||| |||| ||| | |||||||||||||||  | |||||||||||  |||||||| |||||| |||||||| ||||    
T  40934017 tattttttg-gccatttgctcctaataatgtgtctcactaatattaaaaatattgatcatatttattatccaagaaatttggataattttataac-aaaa 40934114  T
Q  283 taaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
     ||||||| ||||| |||||| || |  ||||| |||||||||| |||||||||||||||||| ||| |||||||| |||||||    
T  40934115 caaattatgttttagttgaaattgggtatactggagaaattaatcttaatcttgtctttcaaaggttacaaaaaatgaaattat 40934198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 345
Target Start/End: Original strand, 44733550 - 44733763
Alignment:
Q  133 tggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagcct--tttgtttctaatattgtgcctcgccaatattaa 229  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||  || ||||||||  | ||  | ||||||||||| ||||  || | |||||| |    
T  44733550 tggttgttcttaataatgtgttgaaaaatttattatcgaataaattaatgatattttttttggctcctctgtttctaataatgtgtgtcactaatattga 44733649  T
Q  230 aaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattt 328  Q
    ||||||   |||||||||||||  ||||||| || |||| ||| ||||| |||||||||| || |||| ||||||||||||||||| |||||||||| ||    
T  44733650 aaatatcgatgatatttattatccaagaaatgag-ataattttcataac-aaaataaattctaatttagttgaaaatgagcctact-aagaaattaactt 44733746  T
Q  329 taatcttgtctttcaaa 345  Q
    |||||||||||||||||    
T  44733747 taatcttgtctttcaaa 44733763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 357
Target Start/End: Complemental strand, 28460482 - 28460206
Alignment:
Q  69 attttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcat 168  Q
    |||| |||||||||| ||||| |  |||||  ||||||||||||||| | | | || | ||||||||||||||||||||||||| ||||||| |||| ||    
T  28460482 atttgctatatatacccccgtttagcacaacaatttctatatacaccttccctttaaacaaatttggttgttcttaataatgtgccaaaaaaattattat 28460383  T
Q  169 cgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggata 267  Q
    |||| |||||  || ||||||||    |||        ||||  ||| ||| | | ||||||||||||| ||||||||||||||  ||||| || |||||    
T  28460382 cgaagaaattaatgatatttttt----ctt--------aataacgtgtctcactagtattaaaaatattggtgatatttattatccaagaagtttggata 28460295  T
Q  268 actttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    | ||| |||| |||| |||| |||||||| ||||||||| || ||||  | |||||||||||||| |||||||| ||| |||||||||||    
T  28460294 attttttaac-aaaacaaatgatattttagttgaaaatgggcttactagaaaaattaattttaatattgtcttttaaaggttccaaaaaa 28460206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 8389526 - 8389314
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || |||||||    
T  8389526 cacaaatatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 8389428  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| ||||| ||   ||||||||||||||    ||||||||||||  ||||||| ||||||| ||| |||| ||||  ||||| |    
T  8389427 ggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaatgaggataattttcataa-caaagcaaattct 8389329  T
Q  291 attttaattgaaaat 305  Q
    |||||| ||||||||    
T  8389328 attttagttgaaaat 8389314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 307
Target Start/End: Complemental strand, 24442163 - 24441940
Alignment:
Q  85 cccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggt 183  Q
    |||||||  |||||| ||||||||||||| ||| | |||| ||||||| || |||||||||||||||| ||||||||  || ||| || |||||| || |    
T  24442163 cccgtatagcacaaaaatttctatatacatcctccctataaaaaaattcgggtgttcttaataatgtgccaaaaaata-attatcaaagaaattgttgat 24442065  T
Q  184 atttttt-gagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaa 282  Q
    ||||||| | | | |||||| |||||| |||||    | ||||||||||||||| ||||||||||||||  || ||||| |||||| ||||  | |||||    
T  24442064 atttttttgggtcctttgttcctaataatgtgctcaactaatattaaaaatattggtgatatttattatccaataaattgggataattttaataacaaaa 24441965  T
Q  283 taaattatattttaattgaaaatga 307  Q
     ||||||||||||  ||||||||||    
T  24441964 caaattatatttttgttgaaaatga 24441940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 365
Target Start/End: Complemental strand, 8604819 - 8604552
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttga 192  Q
    ||||||||||||||| |||||| | | |||| ||||||||||||||||||||||||||| || |||| |||| |||||| ||||||||| || |||   |    
T  8604819 cacaaagatttctatgtacacc-tccttata-aaaaatttggttgttcttaataatgtgccagaaaaattattatcgaagaaattggtgataatttacta 8604722  T
Q  193 gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattata 291  Q
       |  |||| |||||| ||||| || | |||||||| |||||| || ||| |||||||  || ||| | ||| |  ||| ||||| ||| |||||||||    
T  8604721 ---taatgttcctaataatgtgcttcactaatattaataatattggtcataattattatccaataaactgggaaattttttataactaaa-taaattata 8604626  T
Q  292 ttttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaatta 365  Q
    ||||| ||||||||   ||||||  | || ||||| |||||||||||||||||| |||||||||||||||||||    
T  8604625 ttttatttgaaaattgacctactagataagttaatcttaatcttgtctttcaaaggttccaaaaaattaaatta 8604552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 358
Target Start/End: Original strand, 21863581 - 21863741
Alignment:
Q  198 ttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttta 296  Q
    ||||| |||||| |||||| | | ||||||||||||||| ||||||||||||||| ||||||||  ||||| ||| |||| ||||  |||||||||||||    
T  21863581 ttgttcctaataatgtgccccactaatattaaaaatattggtgatatttattattcaagaaattgagataattttcataa-caaagcaaattatatttta 21863679  T
Q  297 attgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaat 358  Q
     |||||||||  || | |  |||||||||| |||||| |||| ||||||  |||||||||||    
T  21863680 gttgaaaatggaccaagtagagaaattaatcttaatcatgtccttcaaagattccaaaaaat 21863741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 44733341 - 44733480
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacc-cgtatttcacaaagatttctatatacacccttcatatagaaaa 129  Q
    ||||||| |||||||||||||||  | ||||||||||||||| || ||||||| || ||||   |||||| ||||||||||||||| | | |||| |||     
T  44733341 ggctgaaatctgttaatgttttttgctcttttggcgtgatttgctgtatataccccacgtag--cacaaatatttctatatacaccatac-tataaaaag 44733437  T
Q  130 atttggttgttcttaataatgtgtcaaaaaatttatcatcgaa 172  Q
    ||||||||||||||||||||||||  |||||| ||| ||||||    
T  44733438 atttggttgttcttaataatgtgttgaaaaatctattatcgaa 44733480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 48636674 - 48636812
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | |||||||||||||   ||||||||||||||  || ||||| ||| || ||| |||||||||  ||||||||||||    
T  48636674 tttgttcctaataatgtgtcttactaatattaaaaatacatgtgatatttattatccaaaaaattgggagaattttcataaccaaac-aaattatatttt 48636772  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatctt 335  Q
    | ||||||||| ||||||||||||||||||| ||||||||    
T  48636773 agttgaaaatgggcctactgaagaaattaatcttaatctt 48636812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 45446109 - 45446031
Alignment:
Q  279 aaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    |||| ||||||||||||| ||||||||  |||||||  ||||||||||||||||||| ||||||||| |||||||||||    
T  45446109 aaaacaaattatattttagttgaaaattggcctactagagaaattaattttaatcttttctttcaaaggttccaaaaaa 45446031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 35478204 - 35478036
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttt-ttg 191  Q
    |||||| ||||||||||||||||| | |||| ||||| |||||||||||||||||| ||    ||||||||| |||||| ||||| ||| |||||| |||    
T  35478204 cacaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttaataatatgcttgaaaatttattatcgaagaaattagtgatattttattg 35478106  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
     ||| ||||||  ||||| ||||| |||| ||||||||||||||    ||||||||||||  ||||||||    
T  35478105 ggccctttgttcttaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaatt 35478036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 268
Target Start/End: Complemental strand, 20395012 - 20394837
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-g 191  Q
    |||||| ||||||||||||||||| | |||| ||||| |||||||||| ||||||| ||    ||||||||| |||||| ||||||||| |||||||| |    
T  20395012 cacaaatatttctatatacaccctcc-tataaaaaaaattggttgttcctaataatatgctcgaaaatttattatcgaagaaattggtgatatttttttg 20394914  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataa 268  Q
     ||| ||| ||  ||||| ||||| || | ||||||||||||||    ||||||||||||| |||||||| ||||||    
T  20394913 ggcccttttttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattattcaagaaattgggataa 20394837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 4539750 - 4539911
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttt 198  Q
    ||||||||||||||||| | |||| ||||| |||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || ||||||| ||| ||    
T  4539750 atttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgggccctt 4539848  T
Q  199 tgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
    ||||  ||||| ||||| || | ||||||||||||||    ||||||||||||  ||||||||    
T  4539849 tgttcataataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaatt 4539911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 306
Target Start/End: Complemental strand, 41822424 - 41822149
Alignment:
Q  34 tgaagtctgttaatgtttttgacccttttggcgtgattttctatatata-cacccgtatttcacaaagatttctatatacacccttcatatagaaaaatt 132  Q
    |||||||| |||||||||||  | ||||||| | ||||| |||||| || | |||  ||  ||||||||||| || ||||| ||| |   || |||||||    
T  41822424 tgaagtctattaatgtttttcgcacttttggtgcgatttgctatatgtagctcccacatagcacaaagatttatacatacatcctcccattaaaaaaatt 41822325  T
Q  133 tggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta--ttttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    |||||||||||||||||| | ||||||| ||||  ||||| ||||  ||  ||  ||||| ||  ||||| || |||||| |||||||| | ||||||||    
T  41822324 tggttgttcttaataatgcgccaaaaaaattattgtcgaagaaatcagtcatacatttttggactctttt-ttcctaataatgtgcctcactaatattaa 41822226  T
Q  230 aaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatg 306  Q
    |||||||  |||||||||||||  |||||||| |||||| ||| ||||| ||||||||||||||| || || ||||||    
T  41822225 aaatattgatgatatttattatccaagaaatttggataattttcataac-aaaataaattatattatagttaaaaatg 41822149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 47522534 - 47522411
Alignment:
Q  143 taataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtga 241  Q
    |||||||||| ||||| | ||||||||||| ||||| ||| ||||||||| ||| ||||||| ||||| |||| ||| | ||||||||| || || |  |    
T  47522534 taataatgtgccaaaacaattatcatcgaataaatttgtgatattttttgggccatttgtttttaataatgtgtctcactaatattaaatatgttggcca 47522435  T
Q  242 tatttattattgaagaaattagga 265  Q
    ||||||||||  ||||||||||||    
T  47522434 tatttattatccaagaaattagga 47522411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 13753992 - 13754160
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttt-ttg 191  Q
    |||||| ||||||||||||||||| | |||| ||||| |||||||||||||||||| ||    ||||||||| ||| || ||| | ||| |||||| |||    
T  13753992 cacaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttaataatatgcttgaaaatttattatcaaagaaaatagtgatattttattg 13754090  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
     ||| ||||||  ||||| ||||| || | |||||||||||||| |  ||||||||||||  ||||||||    
T  13754091 ggccctttgttcttaataatgtgcttcactaatattaaaaatatcaacgatatttattatccaagaaatt 13754160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 29637010 - 29636905
Alignment:
Q  201 tttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattg 300  Q
    ||||||||| |||| ||  | |||||||||||||||  |||||||||||||  || ||||| |||||| |||  || ||||| ||||||||||||| |||    
T  29637010 tttctaataatgtgtctgactaatattaaaaatattgatgatatttattatccaataaattgggataattttcaaaacaaaacaaattatattttagttg 29636911  T
Q  301 aaaatg 306  Q
    ||||||    
T  29636910 aaaatg 29636905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 336
Target Start/End: Complemental strand, 6189526 - 6189387
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatatttta 296  Q
    |||||| |||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  ||||| ||| || | | | | ||||| |||||||||||||    
T  6189526 tttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggagaattctcttaacaaaacaaattatatttta 6189427  T
Q  297 attgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
     ||||||||| || ||||  |||||||||| |||||||||    
T  6189426 gttgaaaatgggcatactagagaaattaatcttaatcttg 6189387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 8069633 - 8069691
Alignment:
Q  278 caaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
    ||||| ||||||||||||| ||||||||| |||||||  |||||||||| |||||||||    
T  8069633 caaaacaaattatattttagttgaaaatgggcctactagagaaattaatcttaatcttg 8069691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 48238512 - 48238570
Alignment:
Q  278 caaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
    ||||| ||||||||||||| ||||||||| |||||||  |||||| ||| |||||||||    
T  48238512 caaaacaaattatattttagttgaaaatgggcctactagagaaataaatcttaatcttg 48238570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 305
Target Start/End: Complemental strand, 31072743 - 31072539
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagcctttt 199  Q
    ||||||||||||| || | |||| |||| ||||||||||||| ||||| ||   |||||||||| |||||| ||||| ||| |||||||| | ||  |||    
T  31072743 tttctatatacacactcc-tataaaaaattttggttgttcttgataatatgctcaaaaatttattatcgaagaaatttgtgatatttttttgggcacttt 31072645  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaatt 299  Q
    | | |||||| ||| | || | ||||||||||||||    ||||||||||||  |||||||| |||||| |||   | ||||  ||||| ||||||| ||    
T  31072644 gctcctaataatgtacttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattctattttagtt 31072545  T
Q  300 gaaaat 305  Q
    ||||||    
T  31072544 gaaaat 31072539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 363
Target Start/End: Complemental strand, 11681153 - 11680814
Alignment:
Q  26 ggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatag 125  Q
    |||| |||| ||||||||||||||||||| |||||||||||  |||| |||||| ||| | | |||  |||||||||||||||||||||||| | ||||     
T  11681153 ggttgggctaaagtctgttaatgtttttggcccttttggcgcaatttgctatatgtaccctcatataacacaaagatttctatatacaccctccctatat 11681054  T
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaa 223  Q
    ||||| ||||||||||||||| ||||||||||||| |||| ||| || ||||| ||  || ||||||| ||| ||| || |||||| ||||| || | ||    
T  11681053 aaaaaattggttgttcttaatgatgtgtcaaaaaaattattatccaagaaattagtaatatttttttgggcccttttttcctaataatgtgcttcactaa 11680954  T
Q  224 tattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaat 322  Q
    ||||||||||||| ||||||||||||||  || ||||| | |||| ||| |||| ||||| ||||||||||||| |||||||||| ||||||  | ||||    
T  11680953 tattaaaaatattggtgatatttattatccaataaattggaataattttcataa-caaaacaaattatattttagttgaaaatgaacctactagaaaaat 11680855  T
Q  323 taattttaatcttgtctttcaaatgttccaaaaaattaaat 363  Q
    |||| |||||||| ||||||||| ||| |||| || |||||    
T  11680854 taatcttaatcttatctttcaaaggtttcaaacaaataaat 11680814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 19107741 - 19108092
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    ||||||||| | |||| |||| |||||||||||| ||||||||||| ||||||| |||||||||| | ||||  | | | |||||||||||||||||||     
T  19107741 gatgaaaggcttggctcaagtatgttaatgttttagacccttttggtgtgatttgctatatataccctcgta--taagacagatttctatatacaccctc 19107838  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaattggtggtattttttgagccttttgtttctaatattgtgcctc 218  Q
    | |||| |    ||||||| |||||||||||||| ||||||| |||| || | | || |     ||||||||| ||| |||||| || ||| ||| ||||    
T  19107839 cctataaatgtttttggttattcttaataatgtgccaaaaaaattattatgggagaaattacaatattttttgggccctttgttcctgataatgttcctc 19107938  T
Q  219 gccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaag 318  Q
     | ||||||||||||||| ||||||||||||||  || ||||| |||||| |||  || ||||| ||  ||||||||| |||||||||||| | |    |    
T  19107939 actaatattaaaaatattggtgatatttattatccaaaaaattgggataattttcaaaacaaaaaaatatatattttagttgaaaatgagcatcc----g 19108034  T
Q  319 aaattaattttaatcttgtctttcaaatgttccaaaaaattaaattattgcaaaattg 376  Q
    |||||||| |||||||| |||||  || ||| ||||||| ||||||||| ||| ||||    
T  19108035 aaattaatcttaatcttctctttgtaaggtttcaaaaaaataaattatttcaatattg 19108092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 357
Target Start/End: Original strand, 26817177 - 26817497
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||| |||||||||||||||| || ||||  ||||||||||||||||||| ||  | |  |||||| |||||||||||||||||||  | | |||||    
T  26817177 ggctgaaatctgttaatgtttttggccattttaacgtgattttctatatatac-ccaatgtagcacaaatatttctatatacacccttctaaaaaaaaaa 26817275  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||     ||||||||||| |||   |||||||||| |||||| |||||| || |||||||| |  || ||||||||||||| |||||||  | |||||||    
T  26817276 tt-----gttcttaataaggtgctcaaaaatttattatcgaagaaattgatgatatttttttgtaccctttgtttctaataatgtgcctaactaatatta 26817370  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
     ||||||   |||||||||||||  |||||||| |||||  ||| |||||   || ||||| ||||||| ||||||||  || ||||  ||||||||||     
T  26817371 caaatatcgatgatatttattatccaagaaattgggatatttttcataac---aacaaattctattttagttgaaaataggcatactagagaaattaatc 26817467  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaa 357  Q
    ||||||||||||||||||  ||||||||||    
T  26817468 ttaatcttgtctttcaaagattccaaaaaa 26817497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 268
Target Start/End: Original strand, 1603193 - 1603422
Alignment:
Q  39 tctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttg 138  Q
    ||||||| | |||||| ||||||| | | |||||||||||||||  ||| | |  |||||| ||||||||||||||||| | |||| |||||||||||||    
T  1603193 tctgttagtatttttggcccttttagtgagattttctatatatat-cccatgtaacacaaatatttctatatacaccctcc-tataaaaaaatttggttg 1603290  T
Q  139 ttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatatt 236  Q
    ||||| ||||| ||   |||||||||| |||||| ||||||||| || ||||||| ||| |||||| |||||| ||||| ||   ||||||||||||||     
T  1603291 ttcttgataatatgcttaaaaatttattatcgaagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcattaatattaaaaatatc 1603390  T
Q  237 agtgatatttattattgaagaaattaggataa 268  Q
       ||||||||||||  ||||||| |||||||    
T  1603391 gacgatatttattatccaagaaatgaggataa 1603422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 357
Target Start/End: Complemental strand, 13759002 - 13758742
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-g 191  Q
    |||||| |||||||||||||||||  | ||| ||||||  |||||||||||||||| ||   |||||||||| |||||| ||||||||| |||||||| |    
T  13759002 cacaaaaatttctatatacaccctcta-ataaaaaaat--ggttgttcttaataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 13758906  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattata 291  Q
     | | ||||||  ||||  |||||| | | |||||| |||||||    ||||||||| ||| || ||||| |||||| |||| ||  |||| ||| |||     
T  13758905 ggtcctttgttcataattatgtgccccactaatatttaaaatatcgacgatatttataattcaaaaaattgggataa-tttaaaaaaaaaaaaaactat- 13758808  T
Q  292 ttttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    ||| | |||||||||||||||||  |||||||||| ||||||||||||||||||| || |||||||    
T  13758807 tttaagttgaaaatgagcctactatagaaattaatcttaatcttgtctttcaaatatttcaaaaaa 13758742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 1131588 - 1131826
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||| |||||||||||||||||||||||| | | ||||| |||||||||  ||| |    |||||| ||||||||||||||||| | |||| |||||    
T  1131588 ggctgaattctgttaatgtttttgacccttttagagagatttgctatatatat-cccatgcagcacaaaaatttctatatacaccctcc-tataaaaaaa 1131685  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt--gagccttttgtttctaatattgtgcctcgccaatatt 227  Q
     |||||||||||||||||| ||    ||||||||| |||||| ||||||||| ||||||||  | ||| ||| ||  | ||| ||||| || | ||||||    
T  1131686 attggttgttcttaataatatgctcgaaaatttattatcgaagaaattggtgatatttttttggggcccttttttcttgataatgtgcttcactaatatt 1131785  T
Q  228 aaaaatattagtgatatttattattgaagaaattaggataa 268  Q
    ||||||||    ||||||||||||  |||||||| ||||||    
T  1131786 aaaaatatcgacgatatttattatccaagaaattgggataa 1131826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 15059972 - 15060255
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    |||||| |||| ||||||| | |||||| ||||||| ||||||||||||||||  |||||||||| ||  | |  ||| || |||||||||||||||| |    
T  15059972 gatgaagggtttggctgaaatttgttaaggtttttggcccttttggcgtgattcgctatatatac-ccaatgtagcacgaa-atttctatatacaccc-t 15060068  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcct 217  Q
    | |||| |||||||||||||||||||||||||||   ||| ||||||   |||| | ||||||| ||||||||| ||  ||||||  ||||| |||| ||    
T  15060069 cctata-aaaaatttggttgttcttaataatgtgctcaaatatttattgacgaagacattggtgatattttttgggcactttgttcataataatgtgtct 15060167  T
Q  218 cgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaat 305  Q
    | |  |||||||||||||   |||||||||||||  ||||||||  ||||| ||| |||| ||||| ||||| ||||||| || |||||    
T  15060168 cactgatattaaaaatatcgatgatatttattatccaagaaattgagataattttcataa-caaaacaaattctattttagttaaaaat 15060255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 268
Target Start/End: Original strand, 18675231 - 18675405
Alignment:
Q  95 acaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-ga 192  Q
    ||||| ||||||||||||| ||| | | || || ||||||||||||||||||||| ||    |||||||||| ||||| ||||||||| |||||||| |     
T  18675231 acaaaaatttctatatacatcctcc-tgtaaaacaatttggttgttcttaataatatgctcgaaaatttatcgtcgaagaaattggtgatatttttttgg 18675329  T
Q  193 gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataa 268  Q
    ||| |||||| ||||||  |||  || | |||||||||||||||   ||||||||||||  |||||||||||||||    
T  18675330 gccctttgttcctaataacgtgtttcactaatattaaaaatattgtcgatatttattatccaagaaattaggataa 18675405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 31129595 - 31129890
Alignment:
Q  68 gattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtc--aaaaaatttat 165  Q
    ||||| |||||||||| |  ||||  |||||||||||||||||| ||||| | |||| ||||||| | || |||| |||||||||    |||||| ||||    
T  31129595 gatttgctatatatacccttgtataacacaaagatttctatatagaccctccttataaaaaaatt-gatttttctcaataatgtgaagaaaaaaaattat 31129693  T
Q  166 catcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattagg 264  Q
     |||||| ||||||    ||||||||| ||| ||||||  ||||| |||||||| | | |||||||||||||  |||||||||||||  |||||||| ||    
T  31129694 tatcgaagaaattgacaatattttttgggccctttgttcttaataatgtgcctcactagtattaaaaatattgatgatatttattatcaaagaaattggg 31129793  T
Q  265 ataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaat 363  Q
    |||| ||| |||||  |||  ||||| |||||| ||||||||||| ||    | ||||||||| |||||||| | ||||  | ||| ||||||| |||||    
T  31129794 ataattttcataac--aaaacaattacattttagttgaaaatgagtct----atgaaattaatcttaatcttatatttctcaggtttcaaaaaaataaat 31129887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 366
Target Start/End: Complemental strand, 3229381 - 3229155
Alignment:
Q  132 ttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaa 230  Q
    |||||| |||||||||||||| |||||||||||| |||||| ||||| | | ||||||||  |  |||     |||||| ||| |||| | || ||||||    
T  3229381 ttggtttttcttaataatgtgccaaaaaatttattatcgaagaaattagcgatatttttttggggtttc----ctaataatgt-cctcactaaaattaaa 3229287  T
Q  231 aatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatttt 329  Q
    |||||| ||||||||||||||  |||||||  |||||| ||| ||||| |||| ||||||| |  || |||||||| |||||||    ||||||||| ||    
T  3229286 aatattggtgatatttattatccaagaaatgtggataattttcataac-aaaacaaattatttcctagttgaaaattagcctac----gaaattaatctt 3229192  T
Q  330 aatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||| |||||||| || ||||||||||| ||||||||    
T  3229191 aatcgtgtctttctaaggttccaaaaaaataaattat 3229155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 22012341 - 22012131
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttga 192  Q
    |||||| ||||||||||||||||| | | || |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| | |||||||     
T  22012341 cacaaaaatttctatatacaccctcc-tgtaaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgat-ttttttgg 22012244  T
Q  193 gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattata 291  Q
    ||| |||||| |||||  ||||| ||   ||||||||||||||    ||||||||||||  ||||||||  ||||| ||| |||| ||||  ||||| ||    
T  22012243 gccctttgttcctaattatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaattgagataattttcataa-caaagcaaattcta 22012145  T
Q  292 ttttaattgaaaat 305  Q
    ||||| ||||||||    
T  22012144 ttttagttgaaaat 22012131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 30358798 - 30358900
Alignment:
Q  135 gttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaa 232  Q
    |||||||||||||||||| |||||||||||||| |||| ||||| ||| || ||||||| |||||||||| |||||| | || ||| | || ||||||||    
T  30358798 gttgttcttaataatgtgccaaaaaatttatcaacgaagaaattcgtgatatttttttgggccttttgttcctaataatatgtctcactaacattaaaaa 30358897  T
Q  233 tat 235  Q
    |||    
T  30358898 tat 30358900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 30359615 - 30359717
Alignment:
Q  135 gttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttga-gccttttgtttctaatattgtgcctcgccaatattaaaaa 232  Q
    |||||||||||||||||| |||||||||||||| |||| ||||| ||| |||||||| | |||||||||| |||||| | || ||| | || ||||||||    
T  30359615 gttgttcttaataatgtgccaaaaaatttatcaacgaagaaattcgtgatatttttttaggccttttgttcctaataatatgtctcactaacattaaaaa 30359714  T
Q  233 tat 235  Q
    |||    
T  30359715 tat 30359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 33516724 - 33516611
Alignment:
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||||||  ||||||||||||||  |  ||||| ||| || ||| ||||| |||| ||||||||||||| ||||||||| |||||||  ||||    
T  33516724 aatattaaaaatatatgtgatatttattatccagaaaattgggagaattttcataac-aaaacaaattatattttagttgaaaatgggcctactagagaa 33516626  T
Q  321 attaattttaatctt 335  Q
    |||||| ||||||||    
T  33516625 attaatcttaatctt 33516611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 305
Target Start/End: Original strand, 1422868 - 1423044
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||||||||||||||||||| ||    ||||||||| |||||| ||||||||| |||||||| | ||| |||||| || |||  |||  || | |||||||    
T  1422868 tttggttgttcttaataatatgctcgaaaatttattatcgaagaaattggtgatatttttttgggccctttgttcctgataacgtgtttcactaatatta 1422967  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaat 305  Q
    ||||||||  |||||||||||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| ||||||||    
T  1422968 aaaatattgatgatatttattatccaagaaattgggataattttcataa-caaagcaaattctattttagttgaaaat 1423044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 20990314 - 20990482
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttt-ttg 191  Q
    |||||| ||||||||||||||| | | |||| ||||| |||||||||||||||||| ||    ||||||||| |||||| ||||| ||| |||||| |||    
T  20990314 cacaaaaatttctatatacaccatcc-tataaaaaaaattggttgttcttaataatatgcttgaaaatttattatcgaagaaattagtgatattttattg 20990412  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
     ||| ||||||  ||||| ||||| || | ||||||||||||||    ||||||||||||  ||||||||    
T  20990413 ggccctttgttcttaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaatt 20990482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 34043421 - 34043633
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||||||||||| | |||| |    ||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || |||||||    
T  34043421 cacaaatatttctatatacaccctcc-tataaatttttttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 34043519  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| ||| | ||   ||||||||||||||    ||||||||||||  |||||||  |||||| ||| |||| ||||  ||||| |    
T  34043520 ggccctttgttcctaataatgttcttcattaatattaaaaatatcgacgatatttattatccaagaaatggggataattttcataa-caaagcaaattct 34043618  T
Q  291 attttaattgaaaat 305  Q
    |||||| ||||||||    
T  34043619 attttagttgaaaat 34043633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 3654472 - 3654821
Alignment:
Q  20 atgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttc 119  Q
    |||||||| | |||||||  |||||||||||||||||||||||| | |||||  |||||||||| ||| ||| ||||||||||||||||||  |||||      
T  3654472 atgaaaggatgggctgaaacctgttaatgtttttgacccttttgacatgattcgctatatatacccccatatatcacaaagatttctatattaaccctct 3654571  T
Q  120 atatagaaaaatttggttgttcttaataatgtgtcaaaaaat--ttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgc 215  Q
     |||| |||||||||||||||||||| |||||| |||||||   |||| |||||| ||||| ||| |||||||| || || ||| || |||||| ||||     
T  3654572 ttataaaaaaatttggttgttcttaaaaatgtgccaaaaaaaaattattatcgaagaaattagtgatatttttttgaacccttt-ttcctaataatgtga 3654670  T
Q  216 ctcgcc-aatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctact 314  Q
           |||||||||||||||  |||||||||||||  ||||||||| ||||| ||||| || |||||||||||||||||| |||||||||  ||||||    
T  3654671 aaaaattaatattaaaaatattgatgatatttattatccaagaaattaagataattttattac-aaaataaattatattttagttgaaaatggacctact 3654769  T
Q  315 gaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
      ||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  3654770 agagaaactaattttaatcttgtctttcaaaggttcaaaaaaattaaattat 3654821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 31 - 366
Target Start/End: Complemental strand, 8806607 - 8806273
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacc--cttcatatagaaa 128  Q
    ||||||||  |||||| | ||||| |||||||  | |||||| |||||||||| | | | | |||||||||||||||||||||||  ||  ||| | |||    
T  8806607 ggctgaagcttgttaaagattttggcccttttatcatgatttgctatatatac-ctcatttatcacaaagatttctatatacaccttctctataaaaaaa 8806509  T
Q  129 aatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaa-ttggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatat 226  Q
    || ||||||||||||| ||||||| ||||||| |||| ||  ||||| |||||| |||||||| |  || |||||| |||||   ||||||| | |||||    
T  8806508 aaattggttgttcttactaatgtggcaaaaaaattattataaaaaaaattggtgatatttttttgttccctttgttcctaat---gtgcctcactaatat 8806412  T
Q  227 taaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaat 326  Q
    |||||||||| || |||||||||||  |||||||| |||||| |||||||| |||| ||||||||||||| |||||||||||  || | |||||||||||    
T  8806411 taaaaatatttgtcatatttattatccaagaaattgggataattttataac-aaaacaaattatattttagttgaaaatgagtatagtaaagaaattaat 8806313  T
Q  327 tttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||||||||||||| ||| |||||| |||||||||    
T  8806312 tttaatcttgtctttcaaaggtttcaaaaatttaaattat 8806273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 95 - 366
Target Start/End: Complemental strand, 38915943 - 38915669
Alignment:
Q  95 acaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaattta---tcatcgaa-aaattggtggtatttttt 190  Q
    ||||||||||||||||||||||| |  ||| ||||| |||||| ||||||||||||||  |||||| |||   | ||| || |||||  || |||||||     
T  38915943 acaaagatttctatatacaccctccccataaaaaaaattggtttttcttaataatgtgcgaaaaaaattagtattatcaaagaaatttatgatatttttg 38915844  T
Q  191 gagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattat 290  Q
    | ||| |||||| |||||| |||||||| | ||||||||| |||||||| |||||||||||  |||||||| |||||| ||||||| ||||| ||  |||    
T  38915843 gggccctttgttcctaataatgtgcctcactaatattaaatatattagtcatatttattatccaagaaattgggataattttataa-caaaaaaatatat 38915745  T
Q  291 attttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||| ||||||||  |||||||  |||||||| | ||||| |||||||||||| ||||||||||||||||||||    
T  38915744 attttagttgaaaataggcctactagagaaattagtcttaatgttgtctttcaaaggttccaaaaaattaaattat 38915669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 31 - 366
Target Start/End: Complemental strand, 5121482 - 5121142
Alignment:
Q  31 ggctgaagtctgttaatgtttttgac-ccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaa 129  Q
    ||||||||||||| |||||||||    |||||| ||||||||  |||||||||| |||||||  |||||||| ||||||||||||  | | |||| ||||    
T  5121482 ggctgaagtctgtgaatgtttttttgtcctttttgcgtgattcgctatatatacccccgtatagcacaaagaattctatatacactttccctataaaaaa 5121383  T
Q  130 atttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatatt 227  Q
    ||||||||  ||||||||||| |  |||||| |||| |||||| ||||| ||| || |||||||  || |||||| |||||| |||| |||   ||||||    
T  5121382 atttggttaatcttaataatggggaaaaaaaattattatcgaagaaattagtgatatttttttggtccctttgttcctaataatgtggctcaataatatt 5121283  T
Q  228 aaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaat--ta 324  Q
    ||||||||| ||||||||||||||  || |||||   |||| ||| ||||  |||| ||||| |||||||||||||||| ||||||||  ||||||  ||    
T  5121282 aaaaatattggtgatatttattatccaaaaaattgaaataattttcataa-taaaacaaattttattttaattgaaaattagcctactagagaaattata 5121184  T
Q  325 attttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    || |||||||||||||||||| |||| |||||| ||||||||    
T  5121183 atcttaatcttgtctttcaaaggttctaaaaaaataaattat 5121142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 345
Target Start/End: Complemental strand, 13821157 - 13820844
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    |||||||||||||||||||||||  ||||| ||||  ||||| |||||||||| ||| |||  |||||  ||||||||||| || || |   || |||||    
T  13821157 ggctgaagtctgttaatgtttttagcccttatggcacgatttgctatatatacccccatatagcacaacaatttctatataaactctccccgtaaaaaaa 13821058  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    ||||||||||||||||||| |||||||||| |||| |||||| |||||| || ||||||||  |    | ||| |||||| |||| ||| | || |||||    
T  13821057 tttggttgttcttaataat-tgtcaaaaaa-ttattatcgaagaaattgatgatatttttttgggtcctagttcctaataatgtgtctcactaacattaa 13820960  T
Q  230 aaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattt 328  Q
    ||||||| || |||||||||||| |||||||| |||||| ||| |||| ||||| ||| | ||||||| ||||||||| | ||||| || |||||||| |    
T  13820959 aaatattggtcatatttattattcaagaaatttggataattttcataa-caaaacaaaatctattttagttgaaaatgggtctactaaataaattaatct 13820861  T
Q  329 taatcttgtctttcaaa 345  Q
     ||||||||||||||||    
T  13820860 aaatcttgtctttcaaa 13820844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 345
Target Start/End: Original strand, 29149528 - 29149781
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtc-aaaaaatttatcatcgaa-aaattggtggta-tttttt 190  Q
    |||||||||||||||||||||| | | |||| ||||| ||| ||||| ||||||||||||| |||||| |||| ||| || ||||| ||| || ||||||    
T  29149528 cacaaagatttctatatacaccatgcttataaaaaaaattgattgtttttaataatgtgtcaaaaaaaattattatcaaagaaatttgtgatattttttt 29149627  T
Q  191 gagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaatta 289  Q
    ||| | |||||| |||||| ||||||||   ||||||||||||||| ||||||||||||||  || |||||  ||||| ||| |||||  ||  |||||     
T  29149628 gagtcatttgttcctaataatgtgcctcattaatattaaaaatatttgtgatatttattatccaaaaaattgagataattttcataac--aagcaaattt 29149725  T
Q  290 tattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaa 345  Q
    ||||||| |||||||| ||||||||  |||||||||| ||||||||||||||||||    
T  29149726 tattttagttgaaaatcagcctactagagaaattaatcttaatcttgtctttcaaa 29149781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 142 - 366
Target Start/End: Complemental strand, 6769539 - 6769319
Alignment:
Q  142 ttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatattaaaaatattagt 239  Q
    ||||||||||| |||||| ||||| || ||| ||||| ||| |||||||| | ||| ||||||||||||| ||||||||   ||||||||| |||||  |    
T  6769539 ttaataatgtgccaaaaa-tttattattgaataaatttgtgatatttttttgggccctttgtttctaataatgtgcctcaataatattaaatatattgat 6769441  T
Q  240 gatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtct 339  Q
     |||||||||||  ||||||||  || || |||||||| |||| ||||||||||||| || ||||| ||||||||  |||||||||||||||| ||||||    
T  6769440 catatttattatccaagaaatt--gagaattttataac-aaaacaaattatattttagttaaaaataagcctact--agaaattaattttaatgttgtct 6769346  T
Q  340 ttcaaatgttccaaaaaattaaattat 366  Q
    || |||| |||||||||||||||||||    
T  6769345 ttgaaattttccaaaaaattaaattat 6769319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 140 - 366
Target Start/End: Original strand, 29789468 - 29789695
Alignment:
Q  140 tcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattag 238  Q
    ||||||||||||||| |||||||||| |||||| ||||| ||| ||||||||  ||| |||||| |||| | |||||||| |  |||| ||||||||  |    
T  29789468 tcttaataatgtgtccaaaaatttattatcgaagaaattagtgatattttttttgccctttgttcctaaaaatgtgcctcactgatataaaaaatatcgg 29789567  T
Q  239 tgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgt 337  Q
    |||||||||||||  |||||||| | |||| ||| |||| ||||| ||||| ||||||| ||||||||| | |||||  |||||||||| ||||||||||    
T  29789568 tgatatttattatccaagaaattggaataattttcataa-caaaacaaattctattttagttgaaaatgggtctactagagaaattaatcttaatcttgt 29789666  T
Q  338 ctttcaaatgttccaaaaaattaaattat 366  Q
     |||||||  || ||||||| ||||||||    
T  29789667 ttttcaaagatttcaaaaaaataaattat 29789695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 358
Target Start/End: Complemental strand, 13826439 - 13826180
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagcctttt 199  Q
    ||||||||||||||||| | | || ||||| |||||||||||||||||||||   |||||||||  |||||| ||||  ||| ||||||||| ||| |||    
T  13826439 atttctatatacaccct-cttgtaaaaaaaattggttgttcttaataatgtgctcaaaaatttactatcgaagaaatcagtgatattttttgtgcccttt 13826341  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaat 298  Q
    ||| |||||| |||| ||| | ||||||||||||||   |||||||||||||  |||||||| |||||| ||| ||||| |||| ||||| ||||||| |    
T  13826340 gttcctaataatgtgtctcactaatattaaaaatatcgatgatatttattatccaagaaattgggataattttcataac-aaaacaaattctattttagt 13826242  T
Q  299 tgaaaat--gagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaat 358  Q
    |||||||  | || ||||  | |||||||| |||||||||||| |||||  |||||||||||    
T  13826241 tgaaaatatgggcttactagataaattaatcttaatcttgtctctcaaaaattccaaaaaat 13826180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 94 - 345
Target Start/End: Complemental strand, 16040413 - 16040161
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-g 191  Q
    |||||| ||||||||||| ||||| | |||| ||||| |||||||||||||||||||||   |||||||| | || ||| ||||| ||| |||||||| |    
T  16040413 cacaaatatttctatataaaccctcc-tataaaaaaaattggttgttcttaataatgtgctcaaaaatttgttattgaagaaattagtgatatttttttg 16040315  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| |||| ||| | ||| | ||||||||| ||||||||| ||||  ||||||||  ||||| ||| ||||| |||| ||||  |    
T  16040314 ggccctttgttcctaataatgtgtctcactaatttaaaaaatattggtgatattttttatcaaagaaattgagataattttcataac-aaaacaaatctt 16040216  T
Q  291 attttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaa 345  Q
    |||||||||||||||| |||||||  ||| |||||| ||||| || |||||||||    
T  16040215 attttaattgaaaatgggcctactagagatattaatcttaatattatctttcaaa 16040161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 268
Target Start/End: Original strand, 2676788 - 2677017
Alignment:
Q  39 tctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttg 138  Q
    ||||||| | |||||| ||||||| | | |||||||||||||||  ||| | |  |||||| ||||||||||||||||| | |||| |||||||||||||    
T  2676788 tctgttagtatttttggcccttttagtgagattttctatatatat-cccatgtaacacaaatatttctatatacaccctcc-tataaaaaaatttggttg 2676885  T
Q  139 ttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatatt 236  Q
    ||||| ||||| ||   |||||||||| |||||| ||||||||| || ||||||| ||| |||||| |||||| ||||| ||   ||||||||||||||     
T  2676886 ttcttgataatatgcttaaaaatttattatcgaagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcattaatattaaaaatatc 2676985  T
Q  237 agtgatatttattattgaagaaattaggataa 268  Q
       ||||||||||||  ||||||| |||||||    
T  2676986 gacgatatttattatccaagaaatgaggataa 2677017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 16686983 - 16686747
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    |||||| |||| |||||||||||||||| ||||||| |||||||  |  ||||| |||||||||   || |||  ||||||||||||||| ||||||||     
T  16686983 gatgaagggtttggctgaagtctgttaaagtttttggcccttttatcaagatttgctatatataataccttatagcacaaagatttctatgtacaccctc 16686884  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcg-aaaaattggtggt-attttttgagccttttgtttc---taatattgt 213  Q
    | |||| |||||  ||||||||| | |||||||| ||||||| |||| |||| ||||||||||| |  ||||||| ||  |||||| |   ||||| |||    
T  16686883 cctataaaaaaa--tggttgttcatgataatgtgccaaaaaaattattatcgaaaaaattggtgatgtttttttgggctctttgttcctaataataatgt 16686786  T
Q  214 gcctcgccaatatt-aaaaatattagtgatatttattat 251  Q
    | ||| | |||||| ||||||||||||||||||||||||    
T  16686785 gtctcactaatattaaaaaatattagtgatatttattat 16686747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 23962727 - 23962939
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || |||||||    
T  23962727 cacaaacatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 23962825  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| ||||||  |||| ||   |||||||||||||| |  ||||||||||||  ||||||||  ||||| ||| |||| ||||  ||||| |    
T  23962826 ggccctttgttcctaataacgtgcttcattaatattaaaaatatcaacgatatttattatccaagaaattgagataattttcataa-caaagcaaattct 23962924  T
Q  291 attttaattgaaaat 305  Q
    |||||| ||||||||    
T  23962925 attttagttgaaaat 23962939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 33922580 - 33922441
Alignment:
Q  33 ctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatt 132  Q
    ||||||| ||||||| |||||||||||||| | | ||||| |||||||||| || ||||   ||||| |||||| |||||||||| |  ||| ||||| |    
T  33922580 ctgaagtatgttaatctttttgacccttttagtgcgatttgctatatatacccctgtataaaacaaatatttctgtatacaccctccccataaaaaaaat 33922481  T
Q  133 tggttgttcttaataatgtgtcaaaaaatttatcatcgaa 172  Q
    ||| ||||| |||||||||||  |||||||||| ||||||    
T  33922480 tggctgttcataataatgtgttgaaaaatttattatcgaa 33922441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 26401727 - 26401821
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatataca 113  Q
    ||||||||| | ||||||| |  ||||||||||||| ||||||||| ||||||  |||||||||| |||||||  |||||| |||||||||||||    
T  26401727 gatgaaaggatgggctgaaataagttaatgtttttggcccttttggtgtgattagctatatatacccccgtatagcacaaaaatttctatataca 26401821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 18888945 - 18889113
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| |||||||||||||||| || |||| ||||| |||||||||||| ||||| ||   |||||||||| |||||| ||||| ||| || |||||||    
T  18888945 cacaaaaatttctatatacaccc-tcctataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaatttgtgatatttttttg 18889043  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
     ||| |||| | |||||| ||||| || | ||||||||||||||    ||||||||||||  ||||||||    
T  18889044 ggccctttgctcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaatt 18889113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 38491018 - 38491156
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  ||||||||| || ||| ||||| |||| ||||||||||||    
T  38491018 tttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattaggagaattttcataac-aaaacaaattatatttt 38491116  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatctt 335  Q
    | ||||||||| |||||||  | |||||||| ||||||||    
T  38491117 agttgaaaatgggcctactagataaattaatcttaatctt 38491156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 366
Target Start/End: Original strand, 37134741 - 37134878
Alignment:
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    |||| ||| ||||||||||||||  |||||||| | |||| ||| ||||| |||| ||||||||||||| ||||||||   ||||||  | | |||||||    
T  37134741 aaaaaattggtgatatttattatctaagaaattggaataattttcataac-aaaacaaattatattttagttgaaaatacacctactagaaatattaatt 37134839  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    || ||||||||||||||| ||| | ||||| ||||||||    
T  37134840 ttgatcttgtctttcaaaggtttcgaaaaaataaattat 37134878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 365
Target Start/End: Complemental strand, 43171515 - 43171359
Alignment:
Q  204 ctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaa 303  Q
    |||||| ||||| || | ||||||||||||||| ||||||||||||||  || | |||  ||||| |||     || || |||| |||||||| ||||||    
T  43171515 ctaataatgtgcttcactaatattaaaaatattggtgatatttattatccaatatattgagataatttt-----cataacaaatgatattttagttgaaa 43171421  T
Q  304 atgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaatta 365  Q
    |||  ||||||  |||||||||| ||||| || | ||||||| ||||||||||| |||||||    
T  43171420 atggacctactagagaaattaatcttaattttttttttcaaaggttccaaaaaaataaatta 43171359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 7850286 - 7850425
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  |||||  || || ||| ||||| |||| ||||||||||||    
T  7850286 tttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgagagaattttcataac-aaaacaaattatatttt 7850384  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
    | |||||||||  ||||||| |||||||||| |||||||||    
T  7850385 agttgaaaatggacctactggagaaattaatcttaatcttg 7850425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 37134603 - 37134758
Alignment:
Q  32 gctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaat 131  Q
    |||||||| | | |||||||||| ||||||||| |  |||| ||||||||||  ||||||  || ||| |||||||||||||||| || ||||      |    
T  37134603 gctgaagtttctaaatgtttttggcccttttggtgatatttgctatatataccaccgtatagcagaaatatttctatatacaccc-tcctataatttttt 37134701  T
Q  132 ttggttgttcttaataatgtgtcaaaaaatttatcatcg-aaaaattggtggtattt 187  Q
    |||| ||||||||| |||||| |||||||||||| |||| ||||||||||| |||||    
T  37134702 ttggatgttcttaacaatgtgccaaaaaatttattatcgaaaaaattggtgatattt 37134758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 8806231 - 8806177
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    ||||||||||||||||||||||| || |||||||||| || |||||| |||||||    
T  8806231 attgcaaaattgaatttgataatacaaaatcatgtgagacgcattcatgatcatg 8806177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 306
Target Start/End: Complemental strand, 9409841 - 9409566
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||| |||||||||||||||| ||||||| | | |||||  ||||||||  ||| | |  |||||| ||||||||||||||||| | ||||          
T  9409841 ggctgaaatctgttaatgtttttggcccttttagtgagatttattatatatat-cccatgtggcacaaatatttctatatacaccctcc-tataattttt 9409744  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||||||||||||||||||| ||  ||||||||||| |||||| |||||  || || ||||||| | | ||| || |||||| ||||| || | |||||||    
T  9409743 tttggttgttcttaataatatgctaaaaaatttattatcgaagaaattaatgatatttttttgggtccttttttcctaataatgtgcttcactaatatta 9409644  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatg 306  Q
    |||||||    ||||||| ||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| |||||||||    
T  9409643 aaaatatcgacgatattttttatccaagaaattgggataattttcataa-caaagcaaattctattttagttgaaaatg 9409566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 306
Target Start/End: Complemental strand, 5578892 - 5578622
Alignment:
Q  33 ctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatt 132  Q
    ||||| |||||||||||||||| ||||||| | | ||| | |||||||||  ||| | |  |||||| || |||||||||||||| | | || |||||||    
T  5578892 ctgaaatctgttaatgtttttggcccttttagagagatatgctatatatat-cccatgtagcacaaaaatatctatatacaccct-cgtgtaaaaaaatt 5578795  T
Q  133 tggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatattaaa 230  Q
     ||||||||  |||||| ||    ||||||||| ||| || ||||||||| |||||||| | ||| |||||| |||||| ||||| || | |||||||||    
T  5578794 -ggttgttc--aataatatgctcgaaaatttattatcaaagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcactaatattaaa 5578698  T
Q  231 aatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatg 306  Q
    |||||    ||||||||||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| |||||||||    
T  5578697 aatatcgacgatatttattatccaagaaattgggataattttcataa-caaagcaaattctattttagttgaaaatg 5578622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 29789180 - 29789261
Alignment:
Q  33 ctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacac 114  Q
    |||||||  |||||||||||||||| || |||| |||||| |||||||||| |  ||||  |||| ||||||||||||||||    
T  29789180 ctgaagttcgttaatgtttttgaccattatggcatgatttgctatatatacccttgtataacacagagatttctatatacac 29789261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 13490298 - 13490409
Alignment:
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaa 223  Q
    |||||||||||||||||||||||| ||    ||||||||| |||||| ||||||||| || |||||||  || |||||| |||||| ||| | || | ||    
T  13490298 aaaaatttggttgttcttaataatatgctcgaaaatttattatcgaagaaattggtgatatttttttggaccctttgttcctaataatgtacttcactaa 13490397  T
Q  224 tattaaaaatat 235  Q
    ||||||||||||    
T  13490398 tattaaaaatat 13490409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 305
Target Start/End: Complemental strand, 13382820 - 13382615
Alignment:
Q  102 tttctatatacacccttcatatagaaaaat-ttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttt 198  Q
    |||||||||||||||| | |||| |||||  |||||||||||| ||||| ||   |||||||||| ||| || ||||||||| |||||||| | ||| ||    
T  13382820 tttctatatacaccctcc-tataaaaaaaaattggttgttcttgataatatgctcaaaaatttattatctaagaaattggtgatatttttttgggccctt 13382722  T
Q  199 tgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaat 298  Q
    |  | |||||| ||||| || | ||||||||||||||    ||||||||||||  |||||||| |||||| |||   | ||||  ||||| ||||||| |    
T  13382721 tactcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattctattttagt 13382622  T
Q  299 tgaaaat 305  Q
    |||||||    
T  13382621 tgaaaat 13382615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 16040102 - 16040056
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattca 411  Q
    |||||| |||||||||||||||||||  |||||| ||||||||||||    
T  16040102 attgcagaattgaatttgataatgcaagatcatgcgaaacacattca 16040056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 20892458 - 20892338
Alignment:
Q  131 tttggttgttcttaataatgtg-tcaaaaaatttatcatcgaaa-aattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatt 227  Q
    |||| |||||||||||||| || |||||||||| || ||||||  |||||||| |||||||| | | | | |||| |||||| |||||||| | ||||||    
T  20892458 tttgattgttcttaataatatgctcaaaaaatt-attatcgaagtaattggtgatatttttttgggtcctatgttcctaataatgtgcctcactaatatt 20892360  T
Q  228 aaaaatattagtgatatttatt 249  Q
    |||||||||  |||||||||||    
T  20892359 aaaaatattgatgatatttatt 20892338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 38915627 - 38915574
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcat 418  Q
    |||||||||||||||||||||||||  ||||||| || || |||||| ||||||    
T  38915627 attgcaaaattgaatttgataatgctaaatcatgcgatacgcattcatgatcat 38915574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 20891416 - 20891348
Alignment:
Q  298 ttgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||| ||||| |  |||||||||| ||||| ||||||||||||  |||| ||||| ||||||||    
T  20891416 ttgaaaatgggcctattagagaaattaatcttaattttgtctttcaaagattcccaaaaaataaattat 20891348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 39537609 - 39537474
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttt 198  Q
    ||||||||||||||||| | |||| ||||  ||| |||||||||||||| ||    ||||| ||| |||||| ||||||||| |||||||| | ||| ||    
T  39537609 atttctatatacaccctcc-tataaaaaacattgattgttcttaataatatgctcgaaaatatattatcgaagaaattggtgatatttttttgggccctt 39537511  T
Q  199 tgtttctaatattgtgcctcgccaatattaaaaatat 235  Q
    |||| |||||| ||||| || |  |||||||||||||    
T  39537510 tgttcctaataatgtgcttcactgatattaaaaatat 39537474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 34 - 365
Target Start/End: Original strand, 10141960 - 10142292
Alignment:
Q  34 tgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaattt 133  Q
    |||||| ||||| | ||||| |||||||||||| ||||| |||||| ||| |  ||||  |||||||||||||||||||| ||  | | || |||| |||    
T  10141960 tgaagtatgttattatttttcacccttttggcgcgatttgctatatgtacccaagtatagcacaaagatttctatatacatccacccttta-aaaagttt 10142058  T
Q  134 ggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgag-ccttttgtttctaatattgtgcctcgccaatattaaaa 231  Q
    ||||||||||||||||||| ||||||| |||| |||||| |||||| || ||||||||  | || ||||||||||||| ||||| || | ||||||||||    
T  10142059 ggttgttcttaataatgtgccaaaaaaattattatcgaagaaattgatgatatttttttggaccctttgtttctaataatgtgcttcactaatattaaaa 10142158  T
Q  232 atattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatttta 330  Q
    ||||| ||||||||||||||  || ||||| |||||| ||| |||| ||||| ||||||||||||| ||||||||| | |||||  |||||||||| |||    
T  10142159 atattggtgatatttattatccaataaattgggataattttcataa-caaaacaaattatattttacttgaaaatgggtctactagagaaattaatctta 10142257  T
Q  331 atcttgtctttcaaatgttccaaaaaattaaatta 365  Q
    ||||| ||||| ||| ||| ||||||| |||||||    
T  10142258 atcttatcttttaaaggttgcaaaaaaataaatta 10142292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 31 - 366
Target Start/End: Original strand, 52458832 - 52459166
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||| |||||||||||||||  |||||||||||  |||| |||||||||  ||| | | ||||||| ||||||||||||||||| | ||||  ||||    
T  52458832 ggctgaaatctgttaatgttttttgcccttttggcgcaatttgctatatatat-cccatgtatcacaaacatttctatatacaccctcc-tataataaaa 52458929  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    || |||||||||||||||||||   ||||||||||||||||| ||||| ||| |||||||| | ||| |||||| |||||| |||| ||| | |||||||    
T  52458930 tt-ggttgttcttaataatgtgctcaaaaatttatcatcgaagaaatttgtgatatttttttgggccctttgttcctaataatgtgtctcactaatatta 52459028  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    |||||||   |||||||||||||  |||||||| |||||  ||| ||||| |||| ||||| ||||||| ||||||||| ||||||   |||||||||      
T  52459029 aaaatatcgatgatatttattatccaagaaattgggatatttttcataac-aaaacaaattctattttagttgaaaatgggcctaccagagaaattaacc 52459127  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||||||||||||  |||||||||| ||||||||    
T  52459128 ttaatcttgtctttcaaagattccaaaaaaataaattat 52459166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 31 - 366
Target Start/End: Original strand, 52460089 - 52460423
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||| |||||||||||||||  |||||||||||  |||| |||||||||  ||| | | ||||||| ||||||||||||||||| | ||||  ||||    
T  52460089 ggctgaaatctgttaatgttttttgcccttttggcgcaatttgctatatatat-cccatgtatcacaaacatttctatatacaccctcc-tataataaaa 52460186  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    || |||||||||||||||||||   ||||||||||||||||| ||||| ||| |||||||| | ||| |||||| |||||| |||| ||| | |||||||    
T  52460187 tt-ggttgttcttaataatgtgctcaaaaatttatcatcgaagaaatttgtgatatttttttgggccctttgttcctaataatgtgtctcactaatatta 52460285  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    |||||||   |||||||||||||  |||||||| |||||  ||| ||||| |||| ||||| ||||||| ||||||||| ||||||   |||||||||      
T  52460286 aaaatatcgatgatatttattatccaagaaattgggatatttttcataac-aaaacaaattctattttagttgaaaatgggcctaccagagaaattaacc 52460384  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||||||||||||  |||||||||| ||||||||    
T  52460385 ttaatcttgtctttcaaagattccaaaaaaataaattat 52460423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 32 - 366
Target Start/End: Complemental strand, 29283296 - 29282965
Alignment:
Q  32 gctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaat 131  Q
    ||||||||||||||| ||| | | |||||||| |   |||| |||||||||||||| |||   ||||| ||||||||||||||||| | |||| ||   |    
T  29283296 gctgaagtctgttaaagttatgg-cccttttgtctcaatttgctatatatacacccttataa-acaaaaatttctatatacaccctccctata-aatgtt 29283200  T
Q  132 ttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatt-ttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    |||||| |||||||||||||| ||||||||| || |||||| |||||  || |||| ||||| ||| ||||||||||||| |||||||| | ||||||||    
T  29283199 ttggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgggccctttgtttctaataatgtgcctcactaatattaa 29283101  T
Q  230 aaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatttt 329  Q
    | ||||| || |||||||||||  ||||||||  ||||| |||||||| |||||||||||||||||||||||| || ||  ||||  |||||||||| ||    
T  29283100 atatattggtaatatttattatccaagaaattgagataattttataac-aaaataaattatattttaattgaatataagtttactagagaaattaatctt 29283002  T
Q  330 aatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||| |||| ||||||| ||||||||||||||||||||    
T  29283001 aatattgtttttcaaaggttccaaaaaattaaattat 29282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 366
Target Start/End: Complemental strand, 1843447 - 1843116
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    |||| ||||||||||||||||| ||| ||||||||  |||||  ||||||||| |   |||  |||||||||||||||||||||| | | |||  |||||    
T  1843447 ggctcaagtctgttaatgttttagactcttttggctagatttgttatatatactcttatataacacaaagatttctatatacaccatccctat--aaaaa 1843350  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcat-cgaaaaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatatta 228  Q
     |||||| ||||||||||| | |||||||| |||| ||  || ||||| | | || ||||||| ||| |||||| |||||| |||||||| | |||||||    
T  1843349 attggtttttcttaataatatatcaaaaaaattattatgggagaaattagagatatttttttgggccctttgttcctaataatgtgcctcactaatatta 1843250  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    |||||||| | |||||| |||||  |||||||| |||||| ||| |||| ||||| ||||||||||||  ||||||||||||||    | |||||||||     
T  1843249 aaaatattggagatattcattatctaagaaattgggataattttcataa-caaaacaaattatatttttgttgaaaatgagcct----atgaaattaatc 1843155  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||||||||| || ||||||||||| ||||||||    
T  1843154 ttaatcttgtctttctaaggttccaaaaaaataaattat 1843116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 126 - 346
Target Start/End: Original strand, 13957159 - 13957380
Alignment:
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaat 224  Q
    ||||| |||||||||||||||||||||  | |||| |||| |||||| ||||| ||| ||||||||| ||| |||||| |||||| ||||| || | |||    
T  13957159 aaaaaattggttgttcttaataatgtgctagaaaaattattatcgaagaaattagtgatattttttgggccctttgttcctaataatgtgcttcactaat 13957258  T
Q  225 attaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaatta 324  Q
    || ||||||||||||||||||||||||  || ||||| |||||| |||   | ||||| ||||||||||||| ||||||||   ||||||  ||||| ||    
T  13957259 atgaaaaatattagtgatatttattatccaataaattgggataattttcgtaacaaaacaaattatattttagttgaaaatagacctactagagaaacta 13957358  T
Q  325 attttaatcttgtctttcaaat 346  Q
    || |||||||||||||||||||    
T  13957359 atcttaatcttgtctttcaaat 13957380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 10373674 - 10373325
Alignment:
Q  17 cagatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccc 116  Q
    ||||||||||| | |||||||| ||||||||||||||| |||| ||  ||| |||| |||||||||  ||| ||| | ||||||||||||||||| ||      
T  10373674 cagatgaaaggctgggctgaagcctgttaatgtttttggccctattatcgtaatttgctatatatattcccatatct-acaaagatttctatatagacat 10373576  T
Q  117 ttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgc 215  Q
    | | |||| ||||| ||  || ||||||||||||||  |||| | |||| ||| || ||||||||| ||||||||| |   ||| || | |||| ||| |    
T  10373575 tccctataaaaaaaattaattcttcttaataatgtgctaaaacaattattatcaaataaattggtgatattttttgggttctttcttccgaataatgtcc 10373476  T
Q  216 ctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactg 315  Q
    ||| | ||||||||||||||| || ||||| |||||  ||||||||  ||||| |||||||  |||| ||||||||||||| |||||||||  ||||||     
T  10373475 ctcactaatattaaaaatattggtcatattcattatacaagaaattgagataattttataat-aaaacaaattatattttagttgaaaatggacctacta 10373377  T
Q  316 aagaaattaattttaatcttgtctttcaaatgttcc-aaaaaattaaattat 366  Q
     | |||||||||||||||||||| || |||  |||| |||||||||||||||    
T  10373376 gaaaaattaattttaatcttgtcatttaaagcttccaaaaaaattaaattat 10373325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 366
Target Start/End: Complemental strand, 9922138 - 9921809
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    |||| ||||||||||||||||| | ||||||| | | | ||| |||||||||| | |||||  |||||||||||||||||||||| | | |||| |||||    
T  9922138 ggctcaagtctgttaatgttttcggcccttttagtgagttttgctatatataccctcgtataacacaaagatttctatatacaccatccctataaaaaaa 9922039  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgag-ccttttgtttctaatattgtgcctcgccaatatta 228  Q
    || |||| ||||||||||||||   ||||| |||| || | | ||||||    ||||||||  | || |||| | |||||| |||| ||| | |||||||    
T  9922038 tt-ggtttttcttaataatgtg---aaaaaattattatgggagaaattgactatatttttttggaccctttggtcctaataatgtgtctcactaatatta 9921943  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattt 328  Q
    ||||||||  |||||||||||||  |||||||| |||||| |||   |  |||| ||||||||||||| ||||||||||||||    | ||||||||| |    
T  9921942 aaaatattgatgatatttattatccaagaaattgggataattttcgtaataaaacaaattatattttagttgaaaatgagcct----atgaaattaatct 9921847  T
Q  329 taatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||||||| || ||| ||||| | ||||||||    
T  9921846 taatcttgtctttctaaggtttcaaaataataaattat 9921809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 51758268 - 51758406
Alignment:
Q  34 tgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaattt 133  Q
    ||||||||||||||||||||  ||||||||||| ||||| |||||||||| |  || |  | |||||||||||||||||||||| | |||| ||||| ||    
T  51758268 tgaagtctgttaatgtttttttcccttttggcgcgatttgctatatataccctggtctagcgcaaagatttctatatacaccctccctataaaaaaaatt 51758367  T
Q  134 ggttgttcttaataatgtgtcaaaaaatttatcatcgaa 172  Q
     |||||||||||||||||| |||||||||||| ||||||    
T  51758368 agttgttcttaataatgtgccaaaaaatttattatcgaa 51758406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 357
Target Start/End: Complemental strand, 42512329 - 42512194
Alignment:
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||||||| | ||||||||||||  || ||||| |||||| ||| ||||| |||| ||||||||||||| |||||||||| |||||| |||||    
T  42512329 aatattaaaaatattggggatatttattatccaataaattgggataattttcataac-aaaacaaattatattttagttgaaaatgaacctactaaagaa 42512231  T
Q  321 attaattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    |||||| |||||||||||||||||| ||| |||||||    
T  42512230 attaatcttaatcttgtctttcaaaggtttcaaaaaa 42512194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 268
Target Start/End: Complemental strand, 7414024 - 7413795
Alignment:
Q  39 tctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttg 138  Q
    ||||||| | |||||| ||||||| | | ||||| |||||||||  ||| |||  |||||| ||||||||||||||||| | |||| |||||||||||||    
T  7414024 tctgttagtatttttggcccttttagtgagatttgctatatatat-cccatataacacaaatatttctatatacaccct-cttataaaaaaatttggttg 7413927  T
Q  139 ttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatatt 236  Q
    ||||| ||||| ||  ||||||||||  |||||| ||||||||| || ||||||| ||| |||||| |||||| ||||| || | ||||||||||||||     
T  7413926 ttcttcataatatgctaaaaaatttactatcgaagaaattggtgctatttttttgggccctttgttcctaataatgtgcttcactaatattaaaaatatc 7413827  T
Q  237 agtgatatttattattgaagaaattaggataa 268  Q
       ||||||||||||  |||||||| ||||||    
T  7413826 gacgatatttattatccaagaaattgggataa 7413795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 268
Target Start/End: Complemental strand, 7460105 - 7459876
Alignment:
Q  39 tctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttg 138  Q
    ||||||| | |||||| ||||||| | | ||||| |||||||||  ||| |||  |||||| ||||||||||||||||| | |||| |||||||||||||    
T  7460105 tctgttagtatttttggcccttttagtgagatttgctatatatat-cccatataacacaaatatttctatatacaccct-cttataaaaaaatttggttg 7460008  T
Q  139 ttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatatt 236  Q
    ||||| ||||| ||  ||||||||||  |||||| ||||||||| || ||||||| ||| |||||| |||||| ||||| || | ||||||||||||||     
T  7460007 ttcttcataatatgctaaaaaatttactatcgaagaaattggtgctatttttttgggccctttgttcctaataatgtgcttcactaatattaaaaatatc 7459908  T
Q  237 agtgatatttattattgaagaaattaggataa 268  Q
       ||||||||||||  |||||||| ||||||    
T  7459907 gacgatatttattatccaagaaattgggataa 7459876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 25200844 - 25201023
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    |||| ||||||||||||||||||| || |||||  |  ||||||||||||||| ||| | |   ||||| ||||||||||||||||| |||||| | |||    
T  25200844 ggcttaagtctgttaatgtttttgtccattttgaggcaattttctatatatacccccatgtagaacaaatatttctatatacaccctccatataaataaa 25200943  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcga-aaaattggtggtattttttgagccttttgtttctaata 209  Q
    |||| |||||||||| |||||||||||||| |||| |||||  ||||||||| | ||||||| ||| ||| || ||||||    
T  25200944 tttgtttgttcttaacaatgtgtcaaaaaaattattatcgatgaaattggtgattttttttgggccatttattcctaata 25201023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 21320025 - 21320162
Alignment:
Q  228 aaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    ||||||| | |||||||||||||   || |||||||||||| |||||||| |||| ||||||||||||| ||||||||| || ||||  | ||||||||     
T  21320025 aaaaataatggtgatatttattaaccaataaattaggataattttataac-aaaacaaattatattttagttgaaaatgggcttactagataaattaatc 21320123  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||| | ||||||| ||||||||||||||||||||    
T  21320124 ttaatcttatttttcaaaggttccaaaaaattaaattat 21320162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 366
Target Start/End: Complemental strand, 41509375 - 41509148
Alignment:
Q  139 ttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatatta 237  Q
    ||||||||||| || ||||| | ||||  ||||| ||||||||| ||||||||| | | ||| |  |||||| |||| ||| | |||||||||||||||     
T  41509375 ttcttaataatctgccaaaacaattattctcgaagaaattggtgatattttttgggacctttttacctaataatgtgtctcactaatattaaaaatattg 41509276  T
Q  238 gtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgt 337  Q
    || |||||||||||  ||||||||  || || |||||||| |||  ||||||||||||| ||||||||  ||||| |  |||||||||| |||||  | |    
T  41509275 gtaatatttattatccaagaaattgagacaattttataactaaac-aaattatattttagttgaaaatctgcctattagagaaattaatcttaatggtct 41509177  T
Q  338 ctttcaaatgttccaaaaaattaaattat 366  Q
     ||||||| ||||||||||||||||||||    
T  41509176 ttttcaaaggttccaaaaaattaaattat 41509148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 332
Target Start/End: Complemental strand, 3665657 - 3665451
Alignment:
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaat 224  Q
    |||||||||| |||| |||||||||||   |||||||||| ||| || ||| ||||| ||||||| ||||| |||||| | |||| | || ||| | |||    
T  3665657 aaaaatttggctgttgttaataatgtgctcaaaaatttattatcaaataaaatggtgatatttttggagccctttgttccaaataatatgtctcactaat 3665558  T
Q  225 attaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaatt 323  Q
    ||||||| |||   |||||||||||||| ||||||||  ||||| ||| ||||| |||| ||||| ||||||| ||||||||||||||| |  |||||||    
T  3665557 attaaaa-tatcgatgatatttattattcaagaaattgagataattttcataac-aaaacaaattctattttagttgaaaatgagcctattagagaaatt 3665460  T
Q  324 aattttaat 332  Q
    ||| |||||    
T  3665459 aatcttaat 3665451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 10095249 - 10095037
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttga 192  Q
    |||||| |||||||||| |||||| | |||| |||||||||||||||||| || || ||   |||||| ||| |||||| ||||||||| ||||||||      
T  10095249 cacaaatatttctatatgcaccctcc-tataaaaaaatttggttgttcttgattatatgctcaaaaatgtattatcgaagaaattggtgatatttttttg 10095151  T
Q  193 gcct-tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
    | || |||||| |||||| ||||| ||   |||||||||||||||   ||||||||||||  |||||||| |||||| ||| |||| ||||  ||||| |    
T  10095150 ggctctttgttcctaataatgtgcttcattaatattaaaaatattgacgatatttattatccaagaaattgggataattttcataa-caaagcaaattct 10095052  T
Q  291 attttaattgaaaat 305  Q
    |||||||||||||||    
T  10095051 attttaattgaaaat 10095037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 336
Target Start/End: Original strand, 51337648 - 51337762
Alignment:
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||||||  ||||||||||||||  || ||||| ||| || ||| ||||| |||| ||||||||||||| ||||||||| |||||| | ||||    
T  51337648 aatattaaaaatatatgtgatatttattatccaaaaaattgggagaattttcataac-aaaacaaattatattttagttgaaaatgggcctaccggagaa 51337746  T
Q  321 attaattttaatcttg 336  Q
    |||||| |||||||||    
T  51337747 attaatcttaatcttg 51337762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 22594154 - 22594232
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa 172  Q
    |||||||||||||||||||||| | | |||| ||||| |||||| |||||||||||||| | |||||||||| ||||||    
T  22594154 cacaaagatttctatatacaccttccttataaaaaaaattggtttttcttaataatgtgcctaaaaatttattatcgaa 22594232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 51891095 - 51891001
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatataca 113  Q
    |||||| |||| ||||||||||| |||||||||||| ||||||||||  |||||||||||| |||   |||||  |||||| |||||||||||||    
T  51891095 gatgaagggttgggctgaagtctattaatgtttttggcccttttggcacgattttctatatgtaccgtcgtatagcacaaatatttctatataca 51891001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 364
Target Start/End: Complemental strand, 24611430 - 24611307
Alignment:
Q  241 atatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtct 339  Q
    |||||||||||  ||||||||  ||||| ||| ||||| |||| ||||| ||||||| ||||||||  |||||||  | |||||||  ||||||||||||    
T  24611430 atatttattatccaagaaattgagataattttcataac-aaaacaaattctattttagttgaaaattggcctactagaaaaattaaccttaatcttgtct 24611332  T
Q  340 ttcaaatgttccaaaaaattaaatt 364  Q
    ||||||  |||||||||| ||||||    
T  24611331 ttcaaagattccaaaaaaataaatt 24611307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 51890474 - 51890407
Alignment:
Q  278 caaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaa 345  Q
    ||||||||||||||||||| ||||||||   ||||||  |||||||||| ||| ||||||||||||||    
T  51890474 caaaataaattatattttagttgaaaatagacctactatagaaattaatcttattcttgtctttcaaa 51890407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 51890748 - 51890681
Alignment:
Q  278 caaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaa 345  Q
    ||||||||||||||||||| ||||||||   ||||||  |||||||||| ||| ||||||||||||||    
T  51890748 caaaataaattatattttagttgaaaatagacctactatagaaattaatcttattcttgtctttcaaa 51890681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 25201111 - 25201160
Alignment:
Q  317 agaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||| ||||| |||||||||||||||||| ||||||||||| ||||||||    
T  25201111 agaatttaatcttaatcttgtctttcaaaagttccaaaaaaataaattat 25201160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 52459208 - 52459252
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacatt 409  Q
    |||||| |||||||||||||||||||  |||||||||||||||||    
T  52459208 attgcagaattgaatttgataatgcaagatcatgtgaaacacatt 52459252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 52460465 - 52460509
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacatt 409  Q
    |||||| |||||||||||||||||||  |||||||||||||||||    
T  52460465 attgcagaattgaatttgataatgcaagatcatgtgaaacacatt 52460509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 23935942 - 23935836
Alignment:
Q  157 aaaatttatcatcgaa-aaattggtggtattttttgag-ccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattga 254  Q
    ||||||||| || ||| ||||||||| ||||||||  | || ||| || |||||| |||||||| | |||||||| |||||| ||||||||||||||  |    
T  23935942 aaaatttattattgaagaaattggtgatatttttttggaccctttattcctaataatgtgcctcactaatattaataatattggtgatatttattatcca 23935843  T
Q  255 agaaatt 261  Q
    |||||||    
T  23935842 agaaatt 23935836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 6830723 - 6830674
Alignment:
Q  370 aaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    |||||||||||||||||||||  ||||||||| || |||| |||||||||    
T  6830723 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcatg 6830674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 20152638 - 20152554
Alignment:
Q  32 gctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccct 117  Q
    |||||||||| ||||| |||| | || |||||| | ||||| |||||||||||||| ||||  ||| ||||||||||| |||||||    
T  20152638 gctgaagtctattaatcttttgg-cctttttggtgcgatttgctatatatacacccatattaaacatagatttctataaacaccct 20152554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 358
Target Start/End: Original strand, 12027600 - 12027929
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||| ||| | |||||   ||||| ||||||||||||||| | | |||| |||||    
T  12027600 ggctgaagtatgttaatgtttttggcccttttgacgtgattttctatatgtaccctcgtataatacaaacatttctatatacaccgtccctata-aaaaa 12027698  T
Q  131 tttggttgttcttaataatgtgtc-aaaaaatttatcatcgaa-aaattggtggtattttttga-gccttttgtttctaatattgtgcctcgccaatatt 227  Q
      ||||||||||||||||| || | ||||||||||| |||||| ||||||||| |||||||| | ||| |||||| |||||| ||||| || | ||||||    
T  12027699 aatggttgttcttaataatatgccaaaaaaatttattatcgaataaattggtgatatttttttaggccctttgttcctaataatgtgcttcactaatatt 12027798  T
Q  228 aaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaat 326  Q
    ||||||||| |||||||||||| | ||| |||||  ||| | ||| |||| ||||| |||||| |||||| |||||||||  |||| |  ||||||||||    
T  12027799 aaaaatattggtgatatttattttcgaataaattttgatgattttcataa-caaaacaaattagattttagttgaaaatggacctattagagaaattaat 12027897  T
Q  327 tttaatcttgtctttcaaatgttccaaaaaat 358  Q
     ||||| |||||||||||| |||| |||||||    
T  12027898 cttaatattgtctttcaaaggttcaaaaaaat 12027929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 94 - 366
Target Start/End: Complemental strand, 24185888 - 24185619
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttga 192  Q
    ||||||||||||||| |||| ||| | |||| ||||  |||||| |||||||||||||| ||||||| | || || ||| ||||| ||| | |||||| |    
T  24185888 cacaaagatttctatttacatcctccttata-aaaatcttggttattcttaataatgtgccaaaaaaat-attattgaataaattagtgat-ttttttca 24185792  T
Q  193 gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatat 292  Q
    |||||||  | |||||| |||| ||| | | ||||||||||||| |||||||||||| |  |||||||| |||||| |||||||| |||| |||||||||    
T  24185791 gcctttttctcctaataatgtgtctcactattattaaaaatattggtgatatttattgtccaagaaattgggataattttataac-aaaacaaattatat 24185693  T
Q  293 tttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||| ||||||||| | |||||    |||||||| |||||||||||||||| | ||||||||||||||||||||    
T  24185692 tttagttgaaaatgggtctactagcaaaattaatcttaatcttgtctttcagaagttccaaaaaattaaattat 24185619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 47397834 - 47397490
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    |||||| || ||||||||||||||| |||||||||| | |||||||||| |||| |||||||||| ||| ||    ||||||||||||||| ||||| |     
T  47397834 gatgaagggctaggctgaagtctgtcaatgtttttggctcttttggcgttatttactatatatacccccatacagtacaaagatttctataaacaccttc 47397735  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-----aaattggtggtattttt-tgagccttttgtttctaatattg 212  Q
    | |||| ||||| |||||| ||||||||||| || |||||||||||| || |||      |||||||| ||||||| ||  || |||||| |||||| ||    
T  47397734 cttataaaaaaaattggttattcttaataatttgccaaaaaatttattattgaagaaattaattggtgatatttttctggaccatttgttcctaataatg 47397635  T
Q  213 tgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcct 311  Q
    ||| || | ||||||||||||||   |||||||||||||  |||||||| |||||| ||| ||||   ||   |||||||| ||| |||||||||  |||    
T  47397634 tgcatcactaatattaaaaatatcgatgatatttattatccaagaaattcggataattttcataatggaa--caattatatcttagttgaaaatggacct 47397537  T
Q  312 a-ctgaagaaattaattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    |   ||  |||||||| |||||||||||||||||| |||||||||||    
T  47397536 atgagataaaattaatcttaatcttgtctttcaaaggttccaaaaaa 47397490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 366
Target Start/End: Complemental strand, 5509953 - 5509809
Alignment:
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||||||| |  |||||||||||  |||||||| |||||| ||| ||||| |||||||||| |||||||  |||||||| |||||||  | ||    
T  5509953 aatattaaaaatattggccatatttattatccaagaaattgggataattttcataac-aaaataaattctattttagatgaaaatgtgcctactagataa 5509855  T
Q  321 attaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||| ||||||||||||||||||  ||||||||| |||||||||    
T  5509854 attaatcttaatcttgtctttcaaagattccaaaaatttaaattat 5509809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 17967551 - 17967339
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||||||||||| | |||| ||||| |||||||||||| ||||| ||  ||||||||||| |||||| ||||||||| || |||||||    
T  17967551 cacaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctaaaaaatttattatcgaagaaattggtgctatttttttg 17967453  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattata 291  Q
     ||| |||||| |||||| ||||| || | ||||||||||||||    ||||||||||||  |||||||| |||||| |||   | ||||  ||||| ||    
T  17967452 ggccctttgttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattcta 17967353  T
Q  292 ttttaattgaaaat 305  Q
    ||||| ||||||||    
T  17967352 ttttagttgaaaat 17967339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 366
Target Start/End: Original strand, 9023127 - 9023363
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    ||||||||||||||||||||||   |||||||||| |||||| |||||| || |||||||||  |  ||| ||  ||||| |||||||| | ||||||||    
T  9023127 tttggttgttcttaataatgtgcgcaaaaatttattatcgaagaaattgatgatattttttggacgctttattcataataatgtgcctcactaatattaa 9023226  T
Q  230 aaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatttt 329  Q
    ||||||   |||||||||||||  ||  |||| |||||  ||||  | ||||| ||||| ||||||| ||||||||||| |||||  |||||||||        
T  9023227 aaatatcgatgatatttattatccaaataattgggatagttttaataacaaaacaaattctattttagttgaaaatgagtctactagagaaattaaccaa 9023326  T
Q  330 aatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||||| |||  |||||||||| ||||||||    
T  9023327 aatcttgtcttttaaagattccaaaaaaataaattat 9023363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 308
Target Start/End: Original strand, 25094980 - 25095257
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaa 130  Q
    ||||||| |||||||||||||||| || |||| | | ||||| |||||||||  ||| |    |||||| |||| |||||||||||| | |||| |||||    
T  25094980 ggctgaaatctgttaatgtttttggcctttttagagagatttgctatatatat-cccatgcagcacaaatatttatatatacaccctcc-tataaaaaaa 25095077  T
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatatta 228  Q
     ||||||| |||||||||| ||    |||||||||||||||| ||||||||| |||||||| | ||| |||||| |||||| ||||| || | |||||||    
T  25095078 attggttgatcttaataatatgctcgaaaatttatcatcgaagaaattggtgatatttttttgggccctttgttcctaataatgtgcttcactaatatta 25095177  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgag 308  Q
    ||||||||   | ||||||||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| |||||||||||    
T  25095178 aaaatattgacggtatttattatccaagaaattgggataattttcataa-caaagcaaattctattttagttgaaaatgag 25095257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 366
Target Start/End: Complemental strand, 47559642 - 47559506
Alignment:
Q  228 aaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    |||| |||| ||||||||||||||  || ||||| |||||| |||||||| |||| ||||||||||||| || |||||| || ||||  ||||||||||     
T  47559642 aaaagtattggtgatatttattatcaaaaaaattgggataattttataac-aaaacaaattatattttagttaaaaatgtgcttactagagaaattaatc 47559544  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||| |||||||||||| ||| ||||||||||||||||    
T  47559543 ttaatattgtctttcaaa-gtttcaaaaaattaaattat 47559506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 36296674 - 36296812
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | ||||||||||||||  ||||||||||||||  || ||||| ||| || ||| |||||||||  ||||||||||||    
T  36296674 tttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccaaaaaattgggagaattttcataaccaaac-aaattatatttt 36296772  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatctt 335  Q
    | ||||||||| ||||||||||||||||||| ||||||||    
T  36296773 agttgaaaatgggcctactgaagaaattaatcttaatctt 36296812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 308
Target Start/End: Complemental strand, 49229526 - 49229349
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    ||||| ||||||||| |||||||||||||||| || || ||| |||||  || ||||||||| | | ||||||  ||||| ||||  || | ||||||||    
T  49229526 tttggatgttcttaaaaatgtgtcaaaaaatt-attattgaagaaatttatgatattttttgggtcatttgttcttaataatgtgtttcactaatattaa 49229428  T
Q  230 aaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgag 308  Q
    |||||||  |||||||||||||  |||||||| |||||| ||| ||||| |||||||||||||||||| |||||||||||    
T  49229427 aaatattgatgatatttattatccaagaaattgggataattttcataac-aaaataaattatattttagttgaaaatgag 49229349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 5209776 - 5209643
Alignment:
Q  224 tattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaat 322  Q
    ||||||| ||||| ||||||||||||||  || ||||| |||||| ||| ||||| |||| ||||||||||||| ||||||||   |||||| |||||||    
T  5209776 tattaaacatattggtgatatttattatccaataaattgggataattttcataac-aaaacaaattatattttagttgaaaatatacctactaaagaaat 5209678  T
Q  323 taattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    |||| |||||||||| ||||||| ||| |||||||    
T  5209677 taatcttaatcttgtttttcaaaggtttcaaaaaa 5209643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 294
Target Start/End: Original strand, 48646068 - 48646232
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    ||||||| ||| |||||||||  ||||||| |||| |||||| ||||| ||| |||| |||| ||| || |||| ||||| |||||||| |  |||||||    
T  48646068 tttggtttttcctaataatgttccaaaaaaattattatcgaagaaatttgtgatattatttgggcccttagtttataataatgtgcctcactgatattaa 48646167  T
Q  230 aaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattt 294  Q
    ||||||| ||||||||||||||  || ||||| |||||| |||  || ||||| |||||||||||    
T  48646168 aaatattggtgatatttattatccaataaattgggataattttcaaaacaaaacaaattatattt 48646232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 42722209 - 42722347
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | |||||||||||||   ||||||||||||||  || ||||| ||| || ||| |||||||||  ||||||||||||    
T  42722209 tttgttcctaataatgtgtcttactaatattaaaaatacatgtgatatttattatccaaaaaattgggagaattttcataaccaaac-aaattatatttt 42722307  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatctt 335  Q
    | ||||||||| ||||||||||||||||||| ||||||||    
T  42722308 agttgaaaatgggcctactgaagaaattaatcttaatctt 42722347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 305
Target Start/End: Complemental strand, 34307665 - 34307461
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagcctttt 199  Q
    |||||||||||||||| | |||| ||||| |||||||||||| ||||| ||   |||||||||| |||||| ||||||||| |||||||| | ||| |||    
T  34307665 tttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgggcccttt 34307567  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaatt 299  Q
      | |||||| ||||| || | ||||||||||||||    ||||||||||||| |||||||| |||||| |||   | ||||  ||||| ||||||| ||    
T  34307566 actcctaataatgtgcttcactaatattaaaaatatcgacgatatttattattcaagaaattgggataattttcgtaacaaagcaaattctattttagtt 34307467  T
Q  300 gaaaat 305  Q
    ||||||    
T  34307466 gaaaat 34307461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 22070380 - 22070522
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-g 191  Q
    |||||| ||||||||||||| ||| | |||| |||||||||||||||||| ||||| |    |||||||||| |||||| ||||||||| |||||||| |    
T  22070380 cacaaaaatttctatatacatcctcc-tataaaaaaatttggttgttcttgataatatactcaaaaatttattatcgaagaaattggtgatatttttttg 22070478  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatat 235  Q
     ||| |||||| |||||| ||||| || | ||||||||||||||    
T  22070479 ggccctttgttcctaataatgtgcttcactaatattaaaaatat 22070522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 356
Target Start/End: Original strand, 41665592 - 41665742
Alignment:
Q  205 taatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaa 304  Q
    ||||| |||||||| | |||| |||||| |||  |||||||||||||  |||||||| | | ||||||   | |||| |||||||||||||| |||||||    
T  41665592 taataatgtgcctcactaatactaaaaa-attgatgatatttattatctaagaaattggaaaaactttcctaacaaagtaaattatattttagttgaaaa 41665690  T
Q  305 tgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaa 356  Q
    || | |||||  | |||||| ||||||||||||||||| ||||||| |||||    
T  41665691 tgtgtctactagataaattagttttaatcttgtctttcgaatgttctaaaaa 41665742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 305
Target Start/End: Original strand, 5049340 - 5049544
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagcctttt 199  Q
    |||||||||||||||| | |||| ||||| |||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || ||||||| ||| |||    
T  5049340 tttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgggcccttt 5049438  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaatt 299  Q
    | | |||||| ||| | || | ||||||||||||||    ||||||||||||  |||||||| |||||| |||   | ||||  ||||| ||||||| ||    
T  5049439 gctcctaataatgtacttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattctattttagtt 5049538  T
Q  300 gaaaat 305  Q
    ||||||    
T  5049539 gaaaat 5049544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 305
Target Start/End: Original strand, 21906264 - 21906468
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagcctttt 199  Q
    |||||||||||||||| |||||| || ||||||||||||||| ||||| ||    ||||||||| |||||| ||||||||| || ||||||| ||| |||    
T  21906264 tttctatatacaccct-catataaaagaatttggttgttcttgataatatgctccaaaatttattatcgaagaaattggtgatatttttttgggcccttt 21906362  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaatt 299  Q
    | | |||||| ||||| || | ||||||||||||||     |||||||||||  |||||||| |||||| |||   | ||||  ||||| ||||||| ||    
T  21906363 gctcctaataatgtgcttcactaatattaaaaatatcgacaatatttattatccaagaaattgggataattttcgtaacaaagcaaattctattttagtt 21906462  T
Q  300 gaaaat 305  Q
    ||||||    
T  21906463 gaaaat 21906468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 268
Target Start/End: Original strand, 48999290 - 48999455
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagcctttt 199  Q
    |||||||||||||||| | |||| |||||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| || ||||||| ||| |||    
T  48999290 tttctatatacaccctcc-tata-aaaaatttggttgttcttgataatatg-ctaaaaatttattatcgaagaaattggtgatatttttttgggcccttt 48999386  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataa 268  Q
    | | |||||| ||||| || | ||||||||| ||||    ||||||||||||  |||||||| ||||||    
T  48999387 gctcctaataatgtgcttcactaatattaaacatatcgacgatatttattatccaagaaattgggataa 48999455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 44310372 - 44310490
Alignment:
Q  136 ttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta--ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaaa 232  Q
    |||||||||||||||||   |||||||||| ||| || ||||| ||| ||  ||||||| ||| |||||| |||||| |||||||| | |||||| ||||    
T  44310372 ttgttcttaataatgtgctcaaaaatttattatctaagaaattagtgatattttttttgggccgtttgttcctaataatgtgcctcactaatattgaaaa 44310471  T
Q  233 tattagtgatatttattat 251  Q
    |||| |||||||| |||||    
T  44310472 tattggtgatattaattat 44310490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 44310579 - 44310625
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattca 411  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||    
T  44310579 attgcataattgaatttgataatgcaagatcatgtgaaacacattca 44310625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 48596518 - 48596367
Alignment:
Q  156 aaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattg 253  Q
    |||||||||| |||||| ||||| ||| |||||||| | ||| |||||| |||||| ||||| ||   ||||||||||||||    ||||||||||||      
T  48596518 aaaaatttattatcgaagaaatttgtgatatttttttgggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatcc 48596419  T
Q  254 aagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaat 305  Q
    ||||||||||||||| ||| |||| ||||  ||||| ||||||| ||||||||    
T  48596418 aagaaattaggataattttcataa-caaagcaaattctattttagttgaaaat 48596367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 24185577 - 24185523
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    |||| |||||||||||||||||| || |||||||| |||| |||||| |||||||    
T  24185577 attgtaaaattgaatttgataatacaaaatcatgtaaaacgcattcatgatcatg 24185523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 59 - 357
Target Start/End: Original strand, 47184807 - 47185106
Alignment:
Q  59 ttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaa 158  Q
    ||||||||  |||| |||||| ||| |||||||  ||| |||||||||| ||||||||||| |||| || |||||||||||| ||||||||||  |||||    
T  47184807 ttttggcgcaatttgctatatgtacccccgtatagcacgaagatttctacatacacccttcctataaaataatttggttgtttttaataatgtaccaaaa 47184906  T
Q  159 aatttatcatcgaa-aaattggtggtattt-tttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaag 256  Q
    |||| || |||||| ||||||||| ||||| |||| ||| ||| || |||||| ||| | || | ||||||| ||||||| ||||||||||||||  ||     
T  47184907 aatt-attatcgaagaaattggtgatatttatttgggccctttcttcctaataatgttcttcactaatattacaaatattggtgatatttattatccaat 47185005  T
Q  257 aaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaa 355  Q
    ||||| |||||| ||| |||| ||||| ||||||||||||| |||||||||  || |||  |||||||||| |||||||||||||||||| |||||||||    
T  47185006 aaattgggataattttcataa-caaaacaaattatattttagttgaaaatggacccactagagaaattaatcttaatcttgtctttcaaaggttccaaaa 47185104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 10993371 - 10993054
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    |||||| |||| |||| | || |||||||| ||| | ||||||||||| ||||||| ||||||||   | |||  ||||||  ||||||||||||||||     
T  10993371 gatgaagggttgggctcacgtatgttaatgctttaggcccttttggcgagattttccatatataccatcatataacacaaa--tttctatatacaccctc 10993274  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgag-ccttttgtttctaatattgtgcc 216  Q
    | |||| ||||||| |||| |||||||||||||  |||||||||||| || ||| ||||||| | |||||||| || ||||||||| |||||| ||||||    
T  10993273 cctataaaaaaatt-ggtttttcttaataatgtc-caaaaaatttattatagaataaattggagatatttttttaggccttttgttcctaataatgtgcc 10993176  T
Q  217 tcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactg 315  Q
    || | ||||||||||||||| ||||||||||||||  |||||||| |||||| ||| ||||| |||| |||||  |||||| ||||||||||||||||      
T  10993175 tcactaatattaaaaatattggtgatatttattatccaagaaatttggataattttcataac-aaaacaaatttcattttagttgaaaatgagcctac-- 10993079  T
Q  316 aagaaattaattttaatcttgtctttc 342  Q
      ||||||||||||| |||||||||||    
T  10993078 --gaaattaattttattcttgtctttc 10993054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 131 - 358
Target Start/End: Original strand, 53472036 - 53472263
Alignment:
Q  131 tttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaa 229  Q
    ||||||||||||||||||||| ||||||| |||||||||||| ||||| ||| ||||||||||||| |||||| |||||| ||  |||| |   ||||||    
T  53472036 tttggttgttcttaataatgtatcaaaaattttatcatcgaacaaattagtgatattttttgagccatttgttcctaataatgcacctcactcgtattaa 53472135  T
Q  230 aaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatttt 329  Q
    ||| ||| |||| |||||||||  ||||||||  ||||| ||||  | ||||| ||||||||||||| |||||||||||||||||  | |||||||| ||    
T  53472136 aaa-attggtgaaatttattatccaagaaattgagataattttaataacaaaacaaattatattttagttgaaaatgagcctactacataaattaatctt 53472234  T
Q  330 aatcttgtctttcaaatgttccaaaaaat 358  Q
    |||| ||| ||||||| ||||||||||||    
T  53472235 aatcatgtatttcaaaggttccaaaaaat 53472263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 1424502 - 1424843
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    ||||||||| |  ||||||||||||| ||| ||||| ||||| || |   |||| |||||||||| | ||||| | |||||||||||||||||||||||     
T  1424502 gatgaaaggctgagctgaagtctgttgatgattttg-cccttctgtctcaatttgctatatataccctcgtatat-acaaagatttctatatacaccctc 1424599  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcct 217  Q
    |  ||| ||||||| |||| ||||||| |||||| ||||||| |||| ||| || |||||  || ||||||| |  || |||||| |||||| |||||||    
T  1424600 cccataaaaaaatt-ggtttttcttaaaaatgtgccaaaaaaattattatcaaagaaatttatgatatttttgggaccctttgttcctaataatgtgcct 1424698  T
Q  218 cgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaa 317  Q
    | | ||||||| |  |||||||  ||||||||||  |||||||| |||||| |||||||| |||| ||  ||||||||| ||||||||  |||||||  |    
T  1424699 cactaatattata--tattagtcgtatttattatccaagaaattgggataattttataacaaaaaaaa--tatattttagttgaaaataggcctactaga 1424794  T
Q  318 gaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||||| ||||| |||||| ||||| ||||||||||||||||||||    
T  1424795 gaaattaatcttaatgttgtctatcaaaggttccaaaaaattaaattat 1424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 32 - 357
Target Start/End: Original strand, 12892865 - 12893191
Alignment:
Q  32 gctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaat 131  Q
    |||||| |||||||||||||||| |||||||| ||  |||| ||||| ||||  ||||||  |||||||||||||||| ||||||| | |||| |||||     
T  12892865 gctgaaatctgttaatgtttttg-cccttttgacgctatttgctatacatacctccgtatagcacaaagatttctatacacaccctccctataaaaaaaa 12892963  T
Q  132 ttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgttt--ctaatattgtgcctcgccaatatta 228  Q
    | ||||||||||||||||||| ||||| | || | ||| || |||||  |||||||||||| ||||||| |||  |||| |  ||||||| | |||||||    
T  12892964 t-ggttgttcttaataatgtgccaaaacagttgttatcaaataaattaatggtattttttgggcctttttttttcctaagaacgtgcctcactaatatta 12893062  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    || ||||| ||||| ||||||||  ||||||||  ||||| ||| ||||  |||| | ||| ||||||| |||||||||  ||||||  |||||||||||    
T  12893063 aatatattggtgatgtttattatccaagaaattgagataatttttataag-aaaacatattctattttagttgaaaatggacctactagagaaattaatt 12893161  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaa 357  Q
    |||||||| |||||||||| ||||||||||    
T  12893162 ttaatcttatctttcaaatattccaaaaaa 12893191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 95 - 366
Target Start/End: Complemental strand, 30191394 - 30191123
Alignment:
Q  95 acaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgag 193  Q
    ||||||||||||||||||||||| | ||||      ||||||| |||||| ||||||| || ||| ||||| |||||| ||||| ||| ||||||| | |    
T  30191394 acaaagatttctatatacaccctccctataattttttttggtttttcttactaatgtgccagaaactttattatcgaagaaatttgtgatatttttgg-g 30191296  T
Q  194 ccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatatt 293  Q
    || ||| || |||||| ||||  || | ||||||||| |||||||| |||||||||||  || |||||  ||||| |||||||| |||| ||||||||||    
T  30191295 ccatttattcctaataatgtgtttcactaatattaaatatattagtcatatttattatccaaaaaattgagataattttataac-aaaagaaattatatt 30191197  T
Q  294 ttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaa-aaaattaaattat 366  Q
    ||| ||||||||  |||||||  |||||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  30191196 ttagttgaaaataggcctactagagaaattaatcttaatgttgtctttcaaatgttccaaaaaaattaaattat 30191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 197 - 366
Target Start/End: Original strand, 29713787 - 29713952
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||||||| | ||||||||||||||| ||||||||||||||  |||||||| |||||| ||| |||| ||||| ||||||||||||    
T  29713787 tttgttactaataatgtgcctcactaatattaaaaatattggtgatatttattatctaagaaattgggataattttcataa-caaaacaaattatatttt 29713885  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    | ||||||||||||||||    ||||||||| ||||||||||||||| |  ||||||||||| ||||||||    
T  29713886 agttgaaaatgagcctac----gaaattaatcttaatcttgtctttctatggttccaaaaaaataaattat 29713952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 366
Target Start/End: Complemental strand, 16877151 - 16876830
Alignment:
Q  43 ttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttct 142  Q
    ||||||| | ||||||||||| |   |||| |||||||||| ||| ||| | ||||| ||||||||||||||||| | ||||  ||||||| ||| |||     
T  16877151 ttaatgtgtatgacccttttgtctcaatttgctatatatacccccttatat-acaaatatttctatatacaccctccctata--aaaatttagtttttcc 16877055  T
Q  143 taataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt---gagccttttgtttctaatattgtgcctcgccaatattaaaaatattag 238  Q
    |||||||||| |||||||  ||| |||||| ||||| ||| | ||||||   |  || ||||||||||||| |||| || || ||||||||| ||||| |    
T  16877054 taataatgtgccaaaaaaaatattatcgaataaatttgtgatttttttttttggaccctttgtttctaataatgtgtcttgctaatattaaatatattgg 16876955  T
Q  239 tgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtc 338  Q
    | |||||||||||  ||||||||  || || |||||||| |||| |||| |||||||| |||||||| || | |||  |||||||||| ||||| |||||    
T  16876954 tcatatttattatccaagaaatt--gagaattttataac-aaaacaaataatattttagttgaaaataagtcaactagagaaattaatcttaatgttgtc 16876858  T
Q  339 tttcaaatgttccaaaaaattaaattat 366  Q
    ||| ||||||| ||||||||||||||||    
T  16876857 tttaaaatgttgcaaaaaattaaattat 16876830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 1698222 - 1698569
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    ||||||||| | ||||||| ||||||||||| |||| ||||| ||| | ||||| |||||||||| ||| | |  |||||| | |||||||||||| | |    
T  1698222 gatgaaaggctgggctgaaatctgttaatgtatttggcccttctggtgcgatttcctatatatac-cccatgtagcacaaaaaattctatatacactc-t 1698319  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcc 216  Q
    | |||| ||||| ||||||||| |||||||| ||  ||| ||||||| |||||| ||||| ||| || ||||||| | | ||||||||||||| |||||     
T  1698320 cctataaaaaaaattggttgttattaataatatgctaaagaatttattatcgaagaaattagtgatatttttttggggcctttgtttctaataatgtgct 1698419  T
Q  217 tcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactga 316  Q
    || | ||||||||||||||   |||||||||||||  ||||||||  ||||| |||   | ||||| ||||| ||||| | ||||||||  |  ||||      
T  1698420 tcactaatattaaaaatatcgatgatatttattatccaagaaattgagataattttcctaacaaaacaaattctatttaagttgaaaataggtttactag 1698519  T
Q  317 agaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    | |||||||| |||||||||||||| |||  |||||| ||| ||||||||    
T  1698520 ataaattaatcttaatcttgtctttgaaagattccaagaaaataaattat 1698569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 357
Target Start/End: Complemental strand, 44663507 - 44663291
Alignment:
Q  139 ttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttttgtttctaatattgtgcctcgccaatattaaaaatatt 236  Q
    |||||||||||||| |||||||||||| || ||| ||||||  | |||||||| | | |  ||||| |||||| |||||||| | ||||||||| |||||    
T  44663507 ttcttaataatgtgacaaaaaatttattattgaagaaattgacgatatttttttgggtcacttgttcctaataatgtgcctcactaatattaaatatatt 44663408  T
Q  237 agtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
     ||||||||||||||  ||||||||   |||| |||  || ||||| ||||||||||||| ||||||||||||||||     |||||| |||||||||||    
T  44663407 ggtgatatttattatccaagaaattgaaataattttcaaaacaaaacaaattatattttagttgaaaatgagcctac----aaaattatttttaatcttg 44663312  T
Q  337 tctttcaaatgttccaaaaaa 357  Q
    |||||| || ||| |||||||    
T  44663311 tctttctaaggttacaaaaaa 44663291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 10994376 - 10994164
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| |||||||||||||||| || |||| ||||||||||||||||||  ||||  |   |||||||||| |||||| ||||||||| || |||||||    
T  10994376 cacaaaaatttctatatacaccc-tcctataaaaaaatttggttgttcttggtaatacgctcaaaaatttattatcgaagaaattggtgatatttttttg 10994278  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| ||||| |||| ||||||||||||||    ||||||||||||  |||||||| |||||| ||| |||| ||||  |||||||    
T  10994277 ggccctttgttcctaataatgtgcttcgctaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcataa-caaagcaaattat 10994179  T
Q  291 attttaattgaaaat 305  Q
    |||||| ||||||||    
T  10994178 attttagttgaaaat 10994164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 366
Target Start/End: Complemental strand, 11640209 - 11639946
Alignment:
Q  103 ttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgt 201  Q
    ||||||||||||||| |||||| | |||||||||| || ||||| |||||   |||||||||| | | || ||||||||| ||||| ||  | | ||| |    
T  11640209 ttctatatacaccct-catataaataaatttggttatttttaattatgtgctcaaaaatttattagcaaacaaattggtgatatttgtttggtcctttat 11640111  T
Q  202 ttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattg 300  Q
    |  ||||  ||| |||| | ||||||||||||||   |||||||||||||| |||||||| |||||| ||| ||||| |||||||||| ||||||| |||    
T  11640110 tcataatgatgtacctcactaatattaaaaatatcgatgatatttattattcaagaaattgggataattttcataac-aaaataaattttattttagttg 11640012  T
Q  301 aaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    ||||||  ||||||  |||||||||  ||||| | ||||||||||  |||||||||| ||||||||    
T  11640011 aaaatggacctacttgagaaattaaccttaatatagtctttcaaagattccaaaaaaataaattat 11639946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 305
Target Start/End: Original strand, 19156970 - 19157182
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| ||||||||||||||||| | |||| |||||||||||||||||| ||||| ||   |||||||||| |||||| |||||| || || |||||||    
T  19156970 cacaaatatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattgatgatatttttttg 19157068  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattat 290  Q
     ||| |||||| |||||| ||||| ||   ||||||||||||||    ||||||||||||  ||||||| ||||||| ||| |||| ||||| ||||| |    
T  19157069 ggccctttgttcctaataatgtgcttcattaatattaaaaatatcgacgatatttattatccaagaaatgaggataattttcataa-caaaacaaattct 19157167  T
Q  291 attttaattgaaaat 305  Q
    |||||| ||||||||    
T  19157168 attttagttgaaaat 19157182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 366
Target Start/End: Original strand, 40145388 - 40145613
Alignment:
Q  139 ttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatatta 237  Q
    ||||||||||||||  ||||||  ||| |||||| ||||| ||| ||||||||| ||| ||||||||||||| |||||||| | || |||||| | |||     
T  40145388 ttcttaataatgtgcaaaaaaaactattatcgaataaatttgtgatattttttgggccctttgtttctaataatgtgcctcactaacattaaatacattg 40145487  T
Q  238 gtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgt 337  Q
     | |||||||||||  ||||| || ||| || |||||||| |||| ||||||||||||| || ||||| || ||| |  | |||||||| ||||| ||||    
T  40145488 ttcatatttattatccaagaattt-gga-aattttataac-aaaacaaattatattttagttcaaaataagtctaatagaaaaattaatcttaatgttgt 40145584  T
Q  338 ctttcaaatgttccaaaaaattaaattat 366  Q
     ||| |||||||||||| |||||||||||    
T  40145585 tttttaaatgttccaaagaattaaattat 40145613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 305
Target Start/End: Complemental strand, 53077186 - 53076983
Alignment:
Q  102 tttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttg 200  Q
    |||||||||||||||| | |||| |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| ||||||||| ||| ||||    
T  53077186 tttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatattttttgggccctttg 53077088  T
Q  201 tttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatattttaattg 300  Q
     | |||||| ||| | || | ||||||||||||||    ||||||||||||  |||||||| |||||| |||   | ||||  ||||| ||||||| |||    
T  53077087 ctcctaataatgtacttcactaatattaaaaatatcgacgatatttattatccaagaaattgggataattttcgtaacaaagcaaattctattttagttg 53076988  T
Q  301 aaaat 305  Q
    |||||    
T  53076987 aaaat 53076983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 25071520 - 25071688
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttg 191  Q
    |||||| |||||||||||||||| || |||| ||||| |||||||||||| ||||| ||   |||||||||| |||||| ||||||||| || |||||||    
T  25071520 cacaaaaatttctatatacaccc-tcctataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 25071618  T
Q  192 agccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaatt 261  Q
     ||| ||| || |||||| ||||| || | ||||||||||||||    ||||||||||||  ||||||||    
T  25071619 ggcccttttttcctaataatgtgcttcactaatattaaaaatatcgacgatatttattatccaagaaatt 25071688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 305
Target Start/End: Complemental strand, 27941711 - 27941531
Alignment:
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaat 224  Q
    |||||||||||||||||| ||||| ||   |||||||||| |||||| ||||||||| | ||||||| ||| |||||| |||||  ||||| ||   |||    
T  27941711 aaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgattttttttgggccctttgttcctaattatgtgcttcattaat 27941612  T
Q  225 attaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaat 305  Q
    |||||||||||    ||||||||||||  |||||||| |||||| ||| |||| ||||  ||||| ||||||| ||||||||    
T  27941611 attaaaaatatcgaagatatttattatccaagaaattgggataattttcataa-caaagcaaattctattttagttgaaaat 27941531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 4127160 - 4127348
Alignment:
Q  43 ttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttct 142  Q
    |||||| ||||| ||||| |||   ||||| |||||||||| ||| |||  |||||| ||||||| ||||||||||| ||||  |   |||  || ||||    
T  4127160 ttaatgattttggcccttctggtacgatttgctatatatacccccatatagcacaaatatttctacatacacccttcctata--attttttttttcttct 4127257  T
Q  143 taataatgtgtcaaaaaatttatcatcgaa-aaattggtggta-ttttttgagccttttgtttctaatattgtgcctcgccaatattaaaa 231  Q
    |||||||||||||||||||| || |||||| ||||||||| || ||||||  | | |||||| |||||| |||||||| | ||||||||||    
T  4127258 taataatgtgtcaaaaaattgattatcgaagaaattggtgatattttttttggtcatttgttcctaataatgtgcctcactaatattaaaa 4127348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 23044994 - 23044880
Alignment:
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||| ||  ||||||||||||||  |  ||||| ||| || ||| ||||| |||| ||||||||||||| ||||||||| |||||||| ||||    
T  23044994 aatattaaaaagatatgtgatatttattatccagaaaattgggagaattttcataac-aaaacaaattatattttagttgaaaatgggcctactggagaa 23044896  T
Q  321 attaattttaatcttg 336  Q
    |||||| |||||||||    
T  23044895 attaatcttaatcttg 23044880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 17147224 - 17147296
Alignment:
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataactttataaccaaaataaattatatttt 295  Q
    ||||||||||||||| ||||||||||||||  |||||||| | |||| || |||| ||||||||||||||||||    
T  17147224 aatattaaaaatattggtgatatttattatccaagaaattggaataatttcataa-caaaataaattatatttt 17147296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 336
Target Start/End: Complemental strand, 31885079 - 31884940
Alignment:
Q  197 tttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatatttt 295  Q
    |||||| |||||| |||| ||  | ||||||||||||||  ||||||||||||||  |  ||||| ||| || | | ||||| |||||||||||||||||    
T  31885079 tttgttcctaataatgtgtcttactaatattaaaaatatatgtgatatttattatccagaaaattgggaaaattctcataac-aaaataaattatatttt 31884981  T
Q  296 aattgaaaatgagcctactgaagaaattaattttaatcttg 336  Q
    | ||||||||| || ||||  |||||||||| |||||||||    
T  31884980 agttgaaaatgggcatactagagaaattaatcttaatcttg 31884940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 11830402 - 11830348
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    |||||||||||||||||||||||||  |||| ||||| ||||||||| |||||||    
T  11830402 attgcaaaattgaatttgataatgctaaatcttgtgagacacattcatgatcatg 11830348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 15760736 - 15760832
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt 190  Q
    |||||| |||||||||||||||| || |||| ||||||||||||| |||| ||||| ||   |||||||||| |||||| |||| |||| ||||||||    
T  15760736 cacaaaaatttctatatacaccc-tcctataaaaaaatttggttgatcttgataatatgctcaaaaatttattatcgaagaaataggtgatatttttt 15760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 17147061 - 17147202
Alignment:
Q  19 gatgaaaggttaggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacaccctt 118  Q
    ||||||||||| |||||||   |||||||||||||  ||||||||| |  ||||||||||||||  ||| ||| ||||||| |||    |||| |||||     
T  17147061 gatgaaaggttgggctgaaacttgttaatgtttttcgcccttttggtgatattttctatatatagccccatatatcacaaatatt----tatataccctc 17147156  T
Q  119 catatagaaaaatttggttgttcttaataatgtgtcaaaaaatttat 165  Q
    | |||| ||||| |||||| ||| |||||||||| ||||||| ||||    
T  17147157 cctata-aaaaaattggtttttcctaataatgtgccaaaaaaattat 17147202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 30191081 - 30191027
Alignment:
Q  365 attgcaaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcatg 419  Q
    |||||||||||||||||||||||||  ||||||| || || |||||| |||||||    
T  30191081 attgcaaaattgaatttgataatgctaaatcatgcgagacgcattcatgatcatg 30191027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 4127624 - 4127664
Alignment:
Q  317 agaaattaattttaatcttgtctttcaaatgttccaaaaaa 357  Q
    |||||||||| |||||||||||||||||| ||| |||||||    
T  4127624 agaaattaatcttaatcttgtctttcaaaggtttcaaaaaa 4127664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 362
Target Start/End: Complemental strand, 2720 - 2387
Alignment:
Q  31 ggctgaagtctgttaatgtttttgacccttttggcgtgattttctatatatacacccgtatttcacaaagatttctatatacacccttcatat-agaaaa 129  Q
    ||||||||| | |||||||||||   ||||||||||  |||| |||||| ||| ||  |||   |||||||||| |||||||| | |   ||| | ||||    
T  2720 ggctgaagtttcttaatgtttttagtccttttggcgcaatttgctatatgtactcctatatagaacaaagatttatatatacatcttcgctataaaaaaa 2621  T
Q  130 atttggttgttcttaataatgtgtcaaaaaatttatcatcg-aaaaattggtggtattttttgagccttttgtttctaatattgtgcctcgccaatatta 228  Q
    ||||||||||||||||||||||  ||| ||| |||| |||| | ||||||||| |||||||||  || |||||| |||||| ||||  || | |||||||    
T  2620 atttggttgttcttaataatgtaccaagaaaattattatcgtagaaattggtgatattttttggaccctttgttcctaataatgtgtttcactaatatta 2521  T
Q  229 aaaatattagtgatatttattattgaagaaattaggataactt-tataaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaatt 327  Q
    |||||||||||||||||||||||| || |||||  ||||| ||  |||| ||||| ||||||||||||| |||||||||| |||| |  ||||||||||     
T  2520 aaaatattagtgatatttattattcaataaattgagataatttgcataa-caaaacaaattatattttagttgaaaatgaacctattatagaaattaatc 2422  T
Q  328 ttaatcttgtctttcaaatgttccaaaaaattaaa 362  Q
    ||||||||||||||||||  |||||||||| ||||    
T  2421 ttaatcttgtctttcaaagtttccaaaaaaataaa 2387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 126 - 366
Target Start/End: Original strand, 1219 - 1463
Alignment:
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatt--tatcatcgaa-aaattggtggtattttttgag-ccttttgtttctaatattgtgcctcgcc 221  Q
    ||||| ||||||||||||||||||||| ||||||| |  ||| |||||| ||||| ||  |||||||| || || |||||| |||||| |||||||| |     
T  1219 aaaaaattggttgttcttaataatgtgccaaaaaaatattattatcgaagaaatttgtaatatttttttaggccctttgttcctaataatgtgcctcact 1318  T
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||||||| ||||||||||||||  || |||||  ||| | ||| |||| ||||| ||||| ||||||| |||||||||||||||||  | ||    
T  1319 aatattaaaaatatttgtgatatttattatccaataaattgagattattttcataa-caaaacaaattctattttagttgaaaatgagcctactagaaaa 1417  T
Q  321 attaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
     ||||| ||||||| ||||||||||  |||||||| | ||||||||    
T  1418 cttaatcttaatctagtctttcaaagattccaaaataataaattat 1463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 366
Target Start/End: Complemental strand, 18797 - 18553
Alignment:
Q  126 aaaaatttggttgttcttaataatgtgtcaaaaaatt--tatcatcgaa-aaattggtggtattttttgagc-cttttgtttctaatattgtgcctcgcc 221  Q
    ||||| || |||||||||||||||||| ||||||| |  ||| |||||| ||||| ||  |||||||| ||  | |||||| |||||| |||||||| |     
T  18797 aaaaaattagttgttcttaataatgtgccaaaaaaatattattatcgaagaaatttgtaatatttttttagggcctttgttcctaataatgtgcctcact 18698  T
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||||||| ||||||||||||||  || |||||  ||| | ||| ||||| |||| ||||| ||||||| |||||||||||||||||  | ||    
T  18697 aatattaaaaatattggtgatatttattatccaataaattgagattatttttataac-aaaacaaattttattttagttgaaaatgagcctactagaaaa 18599  T
Q  321 attaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
     ||||| ||||||| ||||||||||  |||||||||| ||||||||    
T  18598 cttaatcttaatctagtctttcaaagattccaaaaaaataaattat 18553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 366
Target Start/End: Original strand, 24980 - 25268
Alignment:
Q  76 atatatacacccgtatttcacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaa 175  Q
    |||||||| ||| |||  |||||||||||||||| ||||| |  ||| | |||||| || || |||||||||||||| ||||| |||||| |||||| ||    
T  24980 atatatacccccttatagcacaaagatttctatacacacctt--ataaa-aaaaatctgatttttcttaataatgtgccaaaatatttattatcgaagaa 25076  T
Q  176 t-tggtggtattttttgagccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataa-cttta 273  Q
      ||||| |||||||||   | |||||| |||||| |||| ||| | ||||||||||||||| ||||||||||||||  ||||||||  |||||  || |    
T  25077 gatggtgatattttttggatcctttgttcctaataatgtgtctcactaatattaaaaatattggtgatatttattatccaagaaattgagataatattca 25176  T
Q  274 taaccaaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    | | ||||  |||||| |||||| ||||||||  || || |  |||| |||||  ||||||||||||||||| |||||| |||| ||||||||    
T  25177 tga-caaaccaaattaaattttagttgaaaattggcatattagagaagttaatcctaatcttgtctttcaaaggttccataaaaataaattat 25268  T

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Target: scaffold0116 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 342
Target Start/End: Original strand, 40693 - 40938
Alignment:
Q  94 cacaaagatttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaaaaattggtggta-ttttttga 192  Q
    |||||| |||| ||||| |||||| | | || |||||||||||| |||||||||||||| ||||||| |||| ||| |||  ||  | |   |||||||     
T  40693 cacaaaaatttatatatgcaccctccctttaaaaaaatttggtttttcttaataatgtgccaaaaaaattattatcaaaattttttttgacgttttttgg 40792  T
Q  193 gccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatatttattattgaagaaattaggataactttata-accaaaataaattata 291  Q
    || ||||||| |||||| |||||||  | ||||||||||||||| ||||||||||||||  ||||||||   |||| |||| | | ||||| ||||||||    
T  40793 gctttttgttcctaataatgtgcctaactaatattaaaaatatttgtgatatttattatccaagaaattgaaataa-tttacataacaaaacaaattata 40891  T
Q  292 ttttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttc 342  Q
    ||||| ||||||||||| ||||     |||||||| |||||||||||||||    
T  40892 ttttagttgaaaatgaggctac----aaaattaatcttaatcttgtctttc 40938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 119572 - 119420
Alignment:
Q  96 caaagatttctatatacacccttcatatagaaaaat-ttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgag 193  Q
    |||||||||||||||||| ||| | ||||  ||||| ||||||||||||||||||||  ||||||  |||| |||||  ||||| ||  ||||||||| |    
T  119572 caaagatttctatatacatcctccctataacaaaatattggttgttcttaataatgttccaaaaatattattatcgacgaaatttgtaatattttttggg 119473  T
Q  194 ccttttgtttctaatattgtgcctcgccaatattaaaaatattagtgatattta 247  Q
    || || ||| |||||| |||||||||| ||||||||||||||| ||||||||||    
T  119472 ccctt-gttcctaataatgtgcctcgctaatattaaaaatattggtgatattta 119420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 98391 - 98304
Alignment:
Q  279 aaaataaattatattttaattgaaaatgagcctactgaagaaattaattttaatcttgtctttcaaatgttccaaaaaattaaattat 366  Q
    |||||||||| ||||||| |||||||||||| | ||  |||||||||| ||||||||||||||||||  |||||||||| ||||||||    
T  98391 aaaataaattctattttagttgaaaatgagcatgctagagaaattaatcttaatcttgtctttcaaagattccaaaaaaataaattat 98304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 87852 - 87718
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtattttttgagcctttt 199  Q
    ||||||||||||||||| | |||| ||||| |||||||||||||||||| || |  ||||||||| |||||| ||||| ||| ||||||||| ||| |||    
T  87852 atttctatatacaccctcc-tataaaaaaaattggttgttcttaataatatgcccgaaaatttattatcgaagaaatttgtgatattttttgggcccttt 87754  T
Q  200 gtttctaatattgtgcctcgccaatattaaaaatat 235  Q
    ||| |||||| ||| | || | ||||||||||||||    
T  87753 gttcctaataatgtacttcactaatattaaaaatat 87718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 89279 - 89144
Alignment:
Q  101 atttctatatacacccttcatatagaaaaatttggttgttcttaataatgtgtcaaaaaatttatcatcgaa-aaattggtggtatttttt-gagccttt 198  Q
    ||||||||||||||||| | |||| ||||| ||| |||||||||||||| ||    ||||||||| |||||| ||||| ||| |||||||| | ||| ||    
T  89279 atttctatatacaccctcc-tataaaaaaaattgattgttcttaataatatgctcgaaaatttattatcgaagaaatttgtgatatttttttgggccctt 89181  T
Q  199 tgtttctaatattgtgcctcgccaatattaaaaatat 235  Q
    |||| |||||| ||| | || | ||||||||||||||    
T  89180 tgttcctaataatgtacttcactaatattaaaaatat 89144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 336
Target Start/End: Complemental strand, 3401 - 3287
Alignment:
Q  222 aatattaaaaatattagtgatatttattattgaagaaattaggataacttt-ataaccaaaataaattatattttaattgaaaatgagcctactgaagaa 320  Q
    ||||||||||||||  ||||||||||||||  || ||||| ||| || ||| ||||| |||| ||||||||||||| ||||||||  |||||||  ||||    
T  3401 aatattaaaaatatatgtgatatttattatctaaaaaattgggagaattttcataac-aaaacaaattatattttagttgaaaattggcctactagagaa 3303  T
Q  321 attaattttaatcttg 336  Q
    |||||  |||||||||    
T  3302 attaaacttaatcttg 3287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 10224 - 10176
Alignment:
Q  370 aaaattgaatttgataatgcagaatcatgtgaaacacattcaggatcat 418  Q
    |||||||||||||||||||||  ||||||||| || |||| ||||||||    
T  10224 aaaattgaatttgataatgcaagatcatgtgagacgcatttaggatcat 10176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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