View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_high_3 (Length: 440)
Name: NF8541_high_3
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 22 - 427
Target Start/End: Complemental strand, 748895 - 748490
Alignment:
| Q |
22 |
cagctgtgattactggtgcagttaatgtcctctcgacaattgtgtctatctacttcgtcgataaacttggtcgtcgtatgttgctgttggaagccggtgt |
121 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
748895 |
cagctgtgattactggtgcagttaatgtcctctccacaattgtgtctatctacttcgttgataaacttggtcgtcgtatgttactgttggaagccggtgt |
748796 |
T |
|
| Q |
122 |
acaaatgttcttgtctcaacttgtgatagcaatcattcttgggatcaaggtgactgatcattctgacgatctttcaaaaggctatgcaatttttgttgtt |
221 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
748795 |
acaaatgttcttgtctcaaattgtgatagcaatcattcttgggatcaaggtgactgatcattctgacgatctttcaaaaggctatgcaatatttgttgtt |
748696 |
T |
|
| Q |
222 |
atattggtatgcactttcgtgtctgccttcgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctg |
321 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
748695 |
atcttggtatgcactttcgtgtctgcctttgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctg |
748596 |
T |
|
| Q |
322 |
gacaaagtgtcacagtttgtgtcaacatgttgttcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgtt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
748595 |
gacaaagtgtcacagtttgtgtcaacatgttgttcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgtt |
748496 |
T |
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| Q |
422 |
cttctc |
427 |
Q |
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|||||| |
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| T |
748495 |
cttctc |
748490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 427
Target Start/End: Original strand, 47212398 - 47212801
Alignment:
| Q |
24 |
gctgtgattactggtgcagttaatgtcctctcgacaattgtgtctatctacttcgtcgataaacttggtcgtcgtatgttgctgttggaagccggtgtac |
123 |
Q |
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|||||||||||||||||| | |||||| |||| || || || || || || | || ||||||||||||||||| | | | | ||||||| ||||| | |
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| T |
47212398 |
gctgtgattactggtgcaatcaatgtcatctcaactatagtttcaatatattcagtggataaacttggtcgtcgaaagctattactggaagctggtgttc |
47212497 |
T |
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| Q |
124 |
aaatgttcttgtctcaacttgtgatagcaatcattcttgggatcaaggtgactgatcattctgacgatctttcaaaaggctatgcaatttttgttgttat |
223 |
Q |
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||||||| ||||| ||| | ||||||||||| | || || ||||| |||| ||||||||||| || || |||||||| |||||| | |||| ||| | |
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| T |
47212498 |
aaatgttgttgtcacaaatggtgatagcaattgtactaggaatcaaagtgaaggatcattctgaggaactctcaaaagggtatgcagctcttgtagttgt |
47212597 |
T |
|
| Q |
224 |
attggtatgcactttcgtgtctgccttcgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctgga |
323 |
Q |
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|||| || | ||| ||||| || || || ||||| |||||||| || | |||||||||||||||||||| ||||||||| |||||||| || || ||| |
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| T |
47212598 |
tatggtttgtatttttgtgtcagcatttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcagga |
47212697 |
T |
|
| Q |
324 |
caaagtgtcacagtttgtgtcaacatgttgttcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgttct |
423 |
Q |
| |
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|||||||| ||||||||||||||| | | ||||| ||||||||| || ||||| || || ||| | ||| | ||||||||||| |||||||| |||| |
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| T |
47212698 |
caaagtgtaacagtttgtgtcaacttcctcttcactgctgtcattgcacaagctttcctttcaatgctttgctatttcaagtttggtatcttctttttct |
47212797 |
T |
|
| Q |
424 |
tctc |
427 |
Q |
| |
|
|||| |
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|
| T |
47212798 |
tctc |
47212801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 427
Target Start/End: Original strand, 47186001 - 47186173
Alignment:
| Q |
255 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgt |
354 |
Q |
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||||| |||||||| || |||||| | ||||| |||||||||||||| | |||||| ||||||||||||||||||| || || | | |||||||||| |
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| T |
47186001 |
tggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgt |
47186100 |
T |
|
| Q |
355 |
tcacctttgtcattgctcaggcttttctatctatgttatgccacttcaagtttggaatcttcttgttcttctc |
427 |
Q |
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| T |
47186101 |
tcacttttcttattgctcaagctttcttgtccatgttgtgccaccttaagtttggaattttcttgtttttctc |
47186173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 47198540 - 47198664
Alignment:
| Q |
255 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgt |
354 |
Q |
| |
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||||| |||||||| || |||||| | ||||| |||||||||||||| | |||||| ||||||||||||||||||| || || | | |||||||||| |
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| T |
47198540 |
tggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgt |
47198639 |
T |
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| Q |
355 |
tcacctttgtcattgctcaggcttt |
379 |
Q |
| |
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|||| ||| | |||||||| ||||| |
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| T |
47198640 |
tcacttttcttattgctcaagcttt |
47198664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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