View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_10 (Length: 367)
Name: NF8541_low_10
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 177 - 353
Target Start/End: Complemental strand, 46861525 - 46861349
Alignment:
| Q |
177 |
ggtccgtggaagacatatacgagtgtcaagtccaaaaaaggaaaatatataacgactacgaaaggagataatgtgaggcaaggtgggtaaaatggaagat |
276 |
Q |
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| T |
46861525 |
ggtccgtggaagacatatacgagtgtcaagtccaaaaaaggaaaatatataacgactacgaaaggagataatgtgaggcaaggtgggtaaaatggaagat |
46861426 |
T |
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| Q |
277 |
tgttaaatgaacaattaagaggcttatgcttattatgtggattcttggcacatttggataaatgttgtgtagcattt |
353 |
Q |
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| T |
46861425 |
tgttaaatgaacaattaagaggcttatgcttattatgtggattcttggcacatttggataaatgttgtgtagcattt |
46861349 |
T |
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Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 46861761 - 46861582
Alignment:
| Q |
1 |
tgaaggaggaagtgtaaatgcatgcaaaactgagttggcgctggcaaggaggtttctaatagaaaacatatatccatacacacataatgaatggacatga |
100 |
Q |
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| T |
46861761 |
tgaaggaggaagtgtaaatgcatgcaaaactgagttggcgctggcaagtaggtttctaatagaaaacatatatccatacacacataatgaatggacatga |
46861662 |
T |
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| Q |
101 |
tggctgggatttggaatttgttatttcatttaagtttttaggtatatatttgtgaccttatatgacaaaagtcttaggtc |
180 |
Q |
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| T |
46861661 |
tggctgggatttggaatttgttatttcatttaagtttttaggtatatatttgtgaccttatatgacaaaagtcgtaggtc |
46861582 |
T |
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