View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_11 (Length: 347)
Name: NF8541_low_11
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 6870384 - 6870050
Alignment:
| Q |
1 |
cattcaaataattaattggttcacacctctattagtacaactcattaacgtgaagtacatgttcttccatcttgtttgatgaaatagaacacattcattt |
100 |
Q |
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| T |
6870384 |
cattcaaataattaattggttcacacctctattagtacaactcattaacgtgaagtacatgttcttccatcttgtttgatgaaataggacacattcattt |
6870285 |
T |
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| Q |
101 |
cattcattaatctctccaactagtttgtattg-----tattgtattgtcttgtggtgttctatcatggctctaatgaacacatcaccattccccatccat |
195 |
Q |
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| T |
6870284 |
catttattaatctctccaactagtttgtattgcattgtattgtattgtgttgtggtgttctatcatggctctaatgaacacatcaccattccccatccat |
6870185 |
T |
|
| Q |
196 |
ttgaaccaatcagcaaaacattttgaccccaaaaaatcaactcctcttggtggttctaactatcaatggggtgcttcagatcttatctcccatcataaac |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6870184 |
ttgaaccaatcagcaaaacattttgaccccaaaaaatcaactcctcttggtggttctaactatcaatggggtgcttcagatcttatctcccatcataaac |
6870085 |
T |
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| Q |
296 |
tcaaccaggttaggactaaaagctttactatgatt |
330 |
Q |
| |
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||||||||||||||||||| || |||||||||||| |
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| T |
6870084 |
tcaaccaggttaggactaagagttttactatgatt |
6870050 |
T |
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