View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8541_low_13 (Length: 331)

Name: NF8541_low_13
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8541_low_13
NF8541_low_13
[»] chr8 (3 HSPs)
chr8 (19-301)||(41127030-41127312)
chr8 (82-179)||(26506761-26506858)
chr8 (109-185)||(26494710-26494786)
[»] chr2 (7 HSPs)
chr2 (26-281)||(2327023-2327278)
chr2 (26-281)||(2303468-2303723)
chr2 (32-281)||(2321169-2321419)
chr2 (46-281)||(2351044-2351279)
chr2 (31-281)||(2293855-2294105)
chr2 (31-281)||(2330738-2330988)
chr2 (38-281)||(2310186-2310429)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 41127312 - 41127030
Alignment:
Q  19 tctttggtcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctg 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41127312 tctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacactagggtccctccctatgtctg 41127213  T
Q  119 ccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtg 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41127212 ccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtg 41127113  T
Q  219 acgcctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattctcttcat 301  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41127112 acacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattctcttcat 41127030  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 26506858 - 26506761
Alignment:
Q  82 ggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctc 179  Q
    ||||| ||||||||||  || |||| ||| |  ||||||||||| ||||| |||  | |||||||||||| |||||||||||| |||| |||||||||    
T  26506858 ggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctc 26506761  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 26494786 - 26494710
Alignment:
Q  109 cctatgtctgccaccatgaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcac 185  Q
    ||||| ||||||||||| ||||||||   | |||||||||||| ||||||||| || ||||| | ||||||| ||||    
T  26494786 cctatatctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcac 26494710  T

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Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 2327278 - 2327023
Alignment:
Q  26 tcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctgccaccat 125  Q
    |||| ||||||||||||| ||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| |||  ||| || |||||||||||    
T  2327278 tccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccat 2327179  T
Q  126 gaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacgcctc 225  Q
    |||||||||   | |||||||||||| ||| ||||| || ||||||||||| ||  |||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  2327178 gaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacacaaaatgccctggtggatgacgcctc 2327079  T
Q  226 agcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 281  Q
    | ||||||||||| ||||||||| | |||  | || || |||||||||||||||||    
T  2327078 aacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctcttt 2327023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 2303723 - 2303468
Alignment:
Q  26 tcccggtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctgccaccat 125  Q
    |||| ||||| ||||||  |||||||||| |||||||||| || |||||||||| |||||| |||||||||||||| |||| ||| || || |||| |||    
T  2303723 tccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcat 2303624  T
Q  126 gaaattcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacgcctc 225  Q
    |||||||||   | |||||||||||| ||| |||||||| |||||||||||||| |||||||| || ||||||| ||| ||||||||||| |||||||||    
T  2303623 gaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacagaaaatgccccggtggatgacgcctc 2303524  T
Q  226 agcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 281  Q
    | |||||||||||  ||||| || | |||  | || |||||||| |||||||||||    
T  2303523 aacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctcttt 2303468  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 32 - 281
Target Start/End: Complemental strand, 2321419 - 2321169
Alignment:
Q  32 taatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaatt 131  Q
    |||||||||||| ||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| |||| | | || || | || |||||||||    
T  2321419 taatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaaatt 2321320  T
Q  132 cactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgcccc-ggtgggtgacgcctcagccc 230  Q
    |||   | |||||||||||| ||| |||||||| |||||||||||||| |||||||  || | ||||||||| |||||| ||||| |||||||||| |||    
T  2321319 caccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaaaatgcccctggtggatgacgcctcatccc 2321220  T
Q  231 ttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 281  Q
    |||||||| ||| ||||| | |||| | || |||||||||| |||||||||    
T  2321219 ttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctcttt 2321169  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 2351279 - 2351044
Alignment:
Q  46 tcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaattcactaccgcatttt 145  Q
    ||||||||||||||||| || || |||||||||| |||||| |||||||||||||| |||| ||| || ||||||||||| ||||| ||   | ||||||    
T  2351279 tcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttt 2351180  T
Q  146 taggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacgcctcagcccttccaaaatcacaca 245  Q
    |||||| ||| |||||||| |||| |||||||||  ||||||| || |||||||||   ||||||||||| |||||||||| ||||||||||| ||||||    
T  2351179 taggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacaca 2351080  T
Q  246 ctttagatatggtaggttctgcaagtcttcctcttt 281  Q
     || |||||    || |||||||| |||||||||||    
T  2351079 tttcagatacaaaagtttctgcaaatcttcctcttt 2351044  T

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Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 2294105 - 2293855
Alignment:
Q  31 gtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaat 130  Q
    ||||| ||||||| ||||||||||||||||||||| || ||||||||||| || || |||||||||||||| |||  | | || || |||| || |||||    
T  2294105 gtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaat 2294006  T
Q  131 tcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacgcctcagccc 230  Q
    ||||   | | |||||||||| ||| |||||||  |||||||||||||| |||||||| || ||||||  ||| | ||||||||| |||||||||| |||    
T  2294005 tcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccggtggatgacgcctcaaccc 2293906  T
Q  231 ttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 281  Q
    |||||||| ||||||||| | |||  | || ||||||||||||||||||||    
T  2293905 ttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctcttt 2293855  T

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Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 2330988 - 2330738
Alignment:
Q  31 gtaatatcaaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaat 130  Q
    ||||| ||||||| ||||||||||||||||||||| || ||||| |||| |||||| ||||||||||||||||||  ||| || ||||| ||||| ||||    
T  2330988 gtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggtccaaccccatctctgcaaccataaaat 2330889  T
Q  131 tcactaccgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacgcctcagccc 230  Q
    ||||   | ||| |||||||| ||| ||||| || ||||||||||||||  |||| || || |||||||| || ||||| ||||| |||||||||| |||    
T  2330888 tcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaaatgccctggtggatgacgcctcaaccc 2330789  T
Q  231 ttccaaaatcacacactttagatatggtaggttctgcaagtcttcctcttt 281  Q
    |||||||| ||| ||||| | |||  | || || |||||||||||||||||    
T  2330788 ttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctcttt 2330738  T

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Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 281
Target Start/End: Complemental strand, 2310429 - 2310186
Alignment:
Q  38 caaaagcctcatccttcaaaaacctttcaggtttaaactccaatggatcttcccaaacacgagggtccctccctatgtctgccaccatgaaattcactac 137  Q
    |||||| ||||||||||||||||||||| || |||||||||||||| || |||||||||||| | |||  | | || || ||||  | |||||||||       
T  2310429 caaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgacgatccaacgccatctccgccagaaagaaattcaccgt 2310330  T
Q  138 cgcatttttaggcagcaagtaaccgttgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacgcctcagcccttccaaa 237  Q
    | | |||||||||| ||| |||||||  |||||||||||||| |||||||| || ||||||  ||| | ||||| ||| |||||||||| ||||||||||    
T  2310329 cccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccgatggatgacgcctcaacccttccaaa 2310230  T
Q  238 atcacacactttagatatggtaggttctgcaagtcttcctcttt 281  Q
    | ||||||||| | |||    || ||||||||||||||||||||    
T  2310229 accacacacttcaaataccaaagtttctgcaagtcttcctcttt 2310186  T

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