View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8541_low_14 (Length: 274)
Name: NF8541_low_14
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 4223876 - 4224130
Alignment:
| Q |
18 |
ctccttgttggtgtgacaattatgaatggttacaatgttgaaggtggaggaagaggtagttaccaaatggagaaagatgattctattaacaattctcaaa |
117 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4223876 |
ctccttattagtgtgacaattatgaatggttacaatgttgaaggtggaggaagaggtagttaccaaatggagaaagatgattctatttacaattctcaaa |
4223975 |
T |
|
| Q |
118 |
agacgattccga------ttttagattgtgtgattttgttcaaattgtgcttttttgttactcctaccttttgtcctcagtactataagatgtgcacaat |
211 |
Q |
| |
|
| || ||||||| || ||||||||||||||||||| |||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4223976 |
aaacaattccgaatccgattatagattgtgtgattttgtttaaattgtgttattttgttagtcctaccttttgtgctcagtactataagatgtgcacaat |
4224075 |
T |
|
| Q |
212 |
tccaaaccacccacccacctcagctcaaagtcttccatgatgatcagagaataat |
266 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4224076 |
tccaaaccccccacccacctcagctcaaagtcttccatgatgatcagagattaat |
4224130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University