View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_16 (Length: 249)
Name: NF8541_low_16
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 33050410 - 33050653
Alignment:
| Q |
1 |
catgatgctcaaattacataacaggttaaaagtcttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatagatta |
100 |
Q |
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| T |
33050410 |
catgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataatagtatcgatta |
33050509 |
T |
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| Q |
101 |
tgttgaaggaaatggtaatgtgttgattcatagtagtttacttgtaacattaacaactcgataaatgttattgattctcttcgatttctcccaaaccata |
200 |
Q |
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| T |
33050510 |
tgttgaaggaaatggtaatgtgttgattcatagtagtttacttgtaacattaacaactcaataaaagtttttgattctcttcgatttctcccaaaccata |
33050609 |
T |
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| Q |
201 |
ttcttttcaaattttcccaatttcctttttgttctaacaccaaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050610 |
ttcttttcaaattttcccaatttcctttttgttctaacaccaaa |
33050653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 5313568 - 5313698
Alignment:
| Q |
4 |
gatgctcaaattacataacaggttaaaa-gtcttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatagattatg |
102 |
Q |
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||||||||||| | || |||||| |||| |||||||| |||| | |||||| |||||||| || ||||| |||||||| | |||||||||||| || || |
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| T |
5313568 |
gatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataatagtatagtttgtg |
5313667 |
T |
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| Q |
103 |
ttgaaggaaatggtaatgtgttgattcatag |
133 |
Q |
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| T |
5313668 |
ttaaaggaactagtaaagtattgattcatag |
5313698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 45495828 - 45495767
Alignment:
| Q |
35 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
96 |
Q |
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||||| |||| |||||||| ||||| |||||||||| |||||||||||||| |||||||||| |
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| T |
45495828 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45495767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 45503570 - 45503509
Alignment:
| Q |
35 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
96 |
Q |
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||||| |||| |||||||| ||||| |||||||||| |||||||||||||| |||||||||| |
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| T |
45503570 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45503509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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