View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_18 (Length: 246)
Name: NF8541_low_18
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 31628579 - 31628780
Alignment:
| Q |
35 |
tgagcaatgtgattatgatagggattaatagcatctataggctcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgattt |
134 |
Q |
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| T |
31628579 |
tgagcaatttgattatgatagggattaatagcatctatagactcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgattt |
31628678 |
T |
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| Q |
135 |
ggaggctgtcattgaagctaaggaacatagaagaagtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatgtcc |
234 |
Q |
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| T |
31628679 |
ggaggctgtcattgaagctaaggaacatagaagaagtactattaggttccaataatgtgatctctgaatttaataaagaggttttgcaattatgatggcc |
31628778 |
T |
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| Q |
235 |
at |
236 |
Q |
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|| |
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| T |
31628779 |
at |
31628780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 31678800 - 31678611
Alignment:
| Q |
47 |
ttatgatagggattaatagcatctataggctcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgatttggaggctgtcat |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31678800 |
ttatgatagggattaatagcatctataggctcttgttttgttggtacagaaagtggtgatgaaaatgcaggatattgttctttgatttggaggttgtcat |
31678701 |
T |
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| Q |
147 |
tgaagctaaggaacatagaagaagtattattaggttccaataaagtgatctcagaatttgataaagagcttttgcaactatgatgtccat |
236 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
31678700 |
tgaagctaagaaacatagatgaagtattattaggttccaataatgtgatctcagaatttgataaagagattttgcaactatgatggccat |
31678611 |
T |
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