View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_19 (Length: 241)
Name: NF8541_low_19
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49520986 - 49520764
Alignment:
| Q |
1 |
tttcctagggagttcctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcatt |
100 |
Q |
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| T |
49520986 |
tttcctagggagttcctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcatt |
49520887 |
T |
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| Q |
101 |
agcaaaattgaagccggagagaggtttgtcgtgtatgtggtgattccaatgtggccagaaggtatacctgagagtgcatcagttcaggcaatattagatt |
200 |
Q |
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| T |
49520886 |
agcaaaattgaagccggagagaggtttgtcgtgtatgtggtgattccaatgtggccagaaggtatacctgagagtgcatcagttcaggcaatattagatt |
49520787 |
T |
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| Q |
201 |
ggcaaagaaggaccatggagatg |
223 |
Q |
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| T |
49520786 |
ggcaaagaaggaccatggagatg |
49520764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 49509836 - 49509618
Alignment:
| Q |
5 |
ctagggagttcctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaagatcattagca |
104 |
Q |
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| T |
49509836 |
ctaggtagttcatatggttggaaatcgtctgatattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtcgctgaagattgttagca |
49509737 |
T |
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| Q |
105 |
aaattgaagccggagagaggtttgtcgtgtatgtggtgattccaatgtggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggca |
204 |
Q |
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| T |
49509736 |
agattgaagctggagagagattttctgtgtacattgtcattccaatgtggccagaaggtatacctgaaagtgcttcagttcaagcaatattagattggca |
49509637 |
T |
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| Q |
205 |
aagaaggaccatggagatg |
223 |
Q |
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| T |
49509636 |
aagaaggactatggagatg |
49509618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 44662779 - 44662930
Alignment:
| Q |
53 |
attggtgcattgcatctcataccaaaggagttgtcattgaagatcattagcaaaattgaagccggagagaggtttgtcgtgtatgtggtgattccaatgt |
152 |
Q |
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| T |
44662779 |
attggtgctttgcatctgatcccaaaagagctttcacttaagattgttagcaagattgaagctggggaaagattcactgtgtatgttgtggttcccatgt |
44662878 |
T |
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| Q |
153 |
ggccagaaggtatacctgagagtgcatcagttcaggcaatattagattggca |
204 |
Q |
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| T |
44662879 |
ggcctgagggtgtcccagaaagttcatcagttcaggcaatattagactggca |
44662930 |
T |
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