View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_2 (Length: 616)
Name: NF8541_low_2
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 97 - 616
Target Start/End: Original strand, 32482156 - 32482675
Alignment:
| Q |
97 |
aaaaaacataagttaggagtattacacaaaaacaaacgttgaaggaagctatagctgctagctgggaagtgatattgaaagcgtgattaacgctgcttgc |
196 |
Q |
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| T |
32482156 |
aaaaaacataagttaggagtattacacaaaaacaaacgttgaaggaagctatagctgctagctgggaagtgatattgaaagcgtgattaacgctgcttgc |
32482255 |
T |
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| Q |
197 |
tgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaattactatactcttttcccaaccataac |
296 |
Q |
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| T |
32482256 |
tgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaattactatactcttttcccaaccataac |
32482355 |
T |
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| Q |
297 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482356 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcac |
32482455 |
T |
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| Q |
397 |
aaatcccaattaattctctctcaactgtttcttgatttctcatgttctttgtaccnnnnnnnnnnnncctatttaggtttttgatatggaaattgagaca |
496 |
Q |
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| T |
32482456 |
aaatcccaattaattctctctcaactgtttcttgatttctcatgttctttgtaccaaaaacaaaaaacctatttaggtttttgatatggaaattgagaca |
32482555 |
T |
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| Q |
497 |
caattaaagaaactattgttgttagggttaaggnnnnnnncttcaaagaaatggctggtttgttctcattaggtggaggtggaagaggaaaccaaggaga |
596 |
Q |
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| T |
32482556 |
caattaaagaaagtattgttgttagggttaaggtttttttcttcaaagaaatggctggtttgttctcattaggaggaggtggaagaggaaaccaaggaga |
32482655 |
T |
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| Q |
597 |
agaatcacaacaacaaggtc |
616 |
Q |
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| T |
32482656 |
agaatcacaacaacaaggtc |
32482675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 32482071 - 32482111
Alignment:
| Q |
13 |
gcagagatagctgtaaaaagactgtggtactgttccttcct |
53 |
Q |
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| T |
32482071 |
gcagagatagctgtaaaaagactgtggtactgttccttcct |
32482111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 11308502 - 11308535
Alignment:
| Q |
335 |
ttgttttgtgtaattttctggagacgcacacaaa |
368 |
Q |
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| T |
11308502 |
ttgttttgtggaattttctggagacgcacacaaa |
11308535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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