View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_21 (Length: 240)
Name: NF8541_low_21
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 13336586 - 13336447
Alignment:
| Q |
86 |
acaagaagcattgaagaatggagtacctatgggaaaacaaaatcaagtacatgttgaccattattagcaggttgttttgtaagaaacaatgtccagtgtt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13336586 |
acaagaagcattgaagaatggagtacctatgggaaaacaaaatcaagtacatgttgaccattattagcaggttgttttgaaagaaacaatgtccagtgtt |
13336487 |
T |
|
| Q |
186 |
gaaaatcttcatagacattactcctttaaactcttttcat |
225 |
Q |
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| T |
13336486 |
gaaaatcttcatagacattactcctttaaactcttttcat |
13336447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 36380509 - 36380647
Alignment:
| Q |
86 |
acaagaagcattgaagaatggagtacctatgggaaaacaaaatcaagtacatgttgaccattattagcaggttgttttgtaagaaacaatgtccagtgtt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36380509 |
acaagaagcattgaagaatggagtacctatgggaaaacaaaatcaagtacaagttggccattattagcaggttgttttgaaagaaacaatgtccagtgtt |
36380608 |
T |
|
| Q |
186 |
gaaaatcttcatagacattactcctttaaactcttttcat |
225 |
Q |
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| T |
36380609 |
gcaaatcttcatagaca-tactccttcaaactcttttcat |
36380647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 6344616 - 6344672
Alignment:
| Q |
94 |
cattgaagaatggagtacctatgggaaaacaaaatcaagtacatgttgaccattattag |
152 |
Q |
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| T |
6344616 |
cattgaagaatggagtacctat-ggaaaacaaaatcaagta-aagttggccattattag |
6344672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 4463186 - 4463044
Alignment:
| Q |
86 |
acaagaagcattgaagaatggagtacctatgggaaaacaaaa-tcaagtacatgttgaccattattagcaggttgttttgtaagaaacaatgtccagtgt |
184 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4463186 |
acaagaagcattgaagaatggagtgcctatgggaaaataaaaatcaagtacaagttgaccattattagcaggttgttttgaaagaaacaatgtccagtgt |
4463087 |
T |
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| Q |
185 |
tgaaaatcttcatagac--attactcctttaaactcttttcat |
225 |
Q |
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|| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
4463086 |
tgcaaatcttcatagacatattactccttcaaactcttttcat |
4463044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 294592 - 294654
Alignment:
| Q |
166 |
aagaaacaatgtccagtgttgaaaatcttcatagacattactcctttaaactcttttcatctc |
228 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||| |
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| T |
294592 |
aagaaacaatgttcagtgttcgaaatcttcatagacattactccttcaaacccttttcatctc |
294654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 8144340 - 8144284
Alignment:
| Q |
96 |
ttgaagaatggagtacctatgggaaaacaaaatcaagtacatgttgaccattattag |
152 |
Q |
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||||||||||| |||| |||| ||||||||||| ||||||| |||| ||||||||| |
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| T |
8144340 |
ttgaagaatggggtacttatgtgaaaacaaaataaagtacaagttgctcattattag |
8144284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 8150561 - 8150505
Alignment:
| Q |
96 |
ttgaagaatggagtacctatgggaaaacaaaatcaagtacatgttgaccattattag |
152 |
Q |
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||||||||||| |||| |||| ||||||||||| ||||||| |||| ||||||||| |
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| T |
8150561 |
ttgaagaatggggtacttatgtgaaaacaaaataaagtacaagttgctcattattag |
8150505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 8155185 - 8155129
Alignment:
| Q |
96 |
ttgaagaatggagtacctatgggaaaacaaaatcaagtacatgttgaccattattag |
152 |
Q |
| |
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||||||||||| |||| |||| ||||||||||| ||||||| |||| ||||||||| |
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| T |
8155185 |
ttgaagaatggggtacttatgtgaaaacaaaataaagtacaagttgctcattattag |
8155129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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