View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8541_low_3 (Length: 601)

Name: NF8541_low_3
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8541_low_3
NF8541_low_3
[»] chr7 (10 HSPs)
chr7 (13-463)||(3390549-3390999)
chr7 (22-463)||(3404904-3405345)
chr7 (294-463)||(3299567-3299736)
chr7 (294-456)||(3361921-3362083)
chr7 (303-463)||(3350544-3350704)
chr7 (294-456)||(3372672-3372834)
chr7 (88-255)||(3350356-3350520)
chr7 (384-449)||(3347207-3347272)
chr7 (23-152)||(3361665-3361794)
chr7 (71-165)||(3372464-3372558)
[»] chr1 (1 HSPs)
chr1 (479-586)||(11877813-11877918)
[»] chr2 (1 HSPs)
chr2 (300-353)||(23992914-23992967)
[»] chr6 (2 HSPs)
chr6 (193-274)||(20721128-20721206)
chr6 (300-371)||(20721214-20721285)


Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Original strand, 3390549 - 3390999
Alignment:
Q  13 cactcctaggaaagctgggtgattcaaatatgatgtgaatgcgtccatataattatcctcattttcatgatggacaaagtgtttaccggcaggtgtgatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390549 cactcctaggaaagctgggtgattcaaatatgatgtgaatgcgtccatataattatcctcattttcatgatggacaaagtgtttaccggcaggtgtgatt 3390648  T
Q  113 gcatgaactctcacaatgctaccatcattgttggtccgagtggaaatggacaggagaccgtggctagcaagtaagcgcagcatacggtcaagcctatttg 212  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390649 gcataaactctcacaatgctaccatcatcgttggtccgagtggaaatggacaggagaccgtggctagcaagtaagcgcagcatacggtcaagcctatttg 3390748  T
Q  213 gtaagtcggagtattgagttattggtaactttgaagcaatttcgaaagccgacacaaatccaacactattttcatgtgatatttccttagcaatgatatc 312  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3390749 gtaagtcggagtattgagttattggtaactttgaggcaatttcgaaagccgacacaaatccaacactactttcatgtgatatttccttagcaatgatatc 3390848  T
Q  313 aaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtaccactatcatctatttgtggg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3390849 aaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtaccactatcatctatttgtggg 3390948  T
Q  413 gtgagagtttccactacatggttctctttctcattggtataggaacccatg 463  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3390949 gtgagagtttccactacatggttctctttatcattggtataggaacccatg 3390999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 463
Target Start/End: Original strand, 3404904 - 3405345
Alignment:
Q  22 gaaagctgggtgattcaaatatgatgtgaatgcgtccatataattatcctcattttcatgatggacaaagtgtttaccggcaggtgtgattgcatgaact 121  Q
    |||||||||||||||||| ||||||||||||| ||||||   ||||||||| |||||||| || ||||||| |||||| | |||||| ||  ||| ||||    
T  3404904 gaaagctgggtgattcaagtatgatgtgaatgagtccatgcgattatcctcgttttcatggtgaacaaagtatttaccagaaggtgtaataccataaact 3405003  T
Q  122 ctcacaatgctaccatcattgttggtccgagtggaaatggacaggagaccgtggctagcaagtaagcgcagcatacggtcaagcctatttggtaagtcgg 221  Q
    || || |||||||||||||  ||||||||||||||| | ||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  3405004 ctgaccatgctaccatcatcattggtccgagtggaactagacagaagaccgtggctagcaagcaagcgtagcatacggtccagcctatttggtaagtcgg 3405103  T
Q  222 agtattgagttattggtaactttgaagcaatttcgaaagccgacacaaatccaacactattttcatgtgatatttccttagcaatgatatcaaacaagtt 321  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||    
T  3405104 agtattgagttattggtaactttgaagcaatttcgaaagatgacacaaatccatcactgttttcatgtgatgtttccttatcaatgatatcaaacaagtt 3405203  T
Q  322 gagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtaccactatcatctatttgtggggtgagagtt 421  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  3405204 gagttcaattgcagctttaaaaactgcaggaaacaccatattggcacctagaatcatggctaagagggtatcactatcatctatttgtagggtgacagtt 3405303  T
Q  422 tccactacatggttctctttctcattggtataggaacccatg 463  Q
    |  ||| ||||||| ||||||||||||  |||||||||||||    
T  3405304 ttgactgcatggttttctttctcattgaaataggaacccatg 3405345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 294 - 463
Target Start/End: Original strand, 3299567 - 3299736
Alignment:
Q  294 tttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtacc 393  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||  | |||||||||||||||| |    
T  3299567 tttccttagcaatgatttcaaacaagttgagttcaattgcggcgttaagaactgcaggaaacaccatattggcacctagcaccatggctaagagggtatc 3299666  T
Q  394 actatcatctatttgtggggtgagagtttccactacatggttctctttctcattggtataggaacccatg 463  Q
    |||||||||||||||||| |||| ||||||||||| || ||||||||||||||| | |||||||||||||    
T  3299667 actatcatctatttgtggagtgaaagtttccactatattgttctctttctcatttgaataggaacccatg 3299736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 3361921 - 3362083
Alignment:
Q  294 tttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtacc 393  Q
    |||||||||||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||||||| | ||| |  | ||| ||  |||| ||| |    
T  3361921 tttccttagcaatgatatcaaataaatggagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccatagcagagagtgtatc 3362020  T
Q  394 actatcatctatttgtggggtgagagtttccactacatggttctctttctcattggtatagga 456  Q
    | | |||||||||||||||||| ||| ||| || ||||| |||||||||||||||||||||||    
T  3362021 attgtcatctatttgtggggtgtgagattcaaccacatgattctctttctcattggtatagga 3362083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 303 - 463
Target Start/End: Original strand, 3350544 - 3350704
Alignment:
Q  303 caatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtaccactatcatc 402  Q
    ||||||| |||||||||||||||| ||||||||| |||| |||||| |||||||||| |||||||||||  | ||||||| |||| ||  || | |||||    
T  3350544 caatgatttcaaacaagttgagttgaattgcagcattaagaactgctggaaacaccaaattggaacctagtaccatggctgagagtgtctcattgtcatc 3350643  T
Q  403 tatttgtggggtgagagtttccactacatggttctctttctcattggtataggaacccatg 463  Q
    ||||||||||||| ||||||| || ||||||||| |||| ||||||| || ||||| ||||    
T  3350644 tatttgtggggtgtgagtttcaacaacatggttcactttgtcattggaattggaactcatg 3350704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 3372672 - 3372834
Alignment:
Q  294 tttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtacc 393  Q
    |||| ||||| ||||| ||||| || ||||||||||||||||| |||| ||||||||||||||||||||| | ||| |  | ||| ||  |||| ||| |    
T  3372672 tttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccatagcagagagtgtatc 3372771  T
Q  394 actatcatctatttgtggggtgagagtttccactacatggttctctttctcattggtatagga 456  Q
    | | |||||||||||||||||| ||  ||| || ||||| |||||||||||||||||||||||    
T  3372772 attgtcatctatttgtggggtgtgacattcaaccacatgattctctttctcattggtatagga 3372834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 255
Target Start/End: Original strand, 3350356 - 3350520
Alignment:
Q  88 aaagtgtttaccggcaggtgtgattgcatgaactctcacaatgctaccatcattgttggtccgagtggaaatggacaggagaccgtggctagcaagtaag 187  Q
    ||||| |||||| | |||||||||  ||  |||||| ||||||||||||||||  || |||||||| ||||| ||||| |||  || ||| ||||| |||    
T  3350356 aaagtatttaccagaaggtgtgatcccaaaaactctaacaatgctaccatcatcattagtccgagtagaaatagacagaagagagtagcttgcaagcaag 3350455  T
Q  188 cgcagcatacggtcaagcctatttggtaagtcggagtattgagttattggtaactttgaagcaatttc 255  Q
    || | ||||||||| |||| |||||| || || |||| |||||   ||||||| ||||||||||||||    
T  3350456 cgtaacatacggtcgagccgatttggcaaatcagagtgttgag---ttggtaagtttgaagcaatttc 3350520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 449
Target Start/End: Original strand, 3347207 - 3347272
Alignment:
Q  384 agagggtaccactatcatctatttgtggggtgagagtttccactacatggttctctttctcattgg 449  Q
    |||| ||| ||||||||||||||||||||||| ||| ||| | | ||||||| |||||||||||||    
T  3347207 agagtgtatcactatcatctatttgtggggtgtgagattcaatttcatggttttctttctcattgg 3347272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 3361665 - 3361794
Alignment:
Q  23 aaagctgggtgattcaaatatgatgtgaatgcgtccatataattatcctcattttcatgatggacaaagtgtttaccggcaggtgtgattgcatgaactc 122  Q
    ||||| ||||||  |||| |||||||||||| | ||| |||| ||||  |||||||||  | |||||| | |||||| |  ||||||||  ||| |||||    
T  3361665 aaagcagggtgagacaaaaatgatgtgaatgagcccaaataactatcaccattttcatacttgacaaaatatttaccagatggtgtgatcccataaactc 3361764  T
Q  123 tcacaatgctaccatcattgttggtccgag 152  Q
    |||| |||||||||||||  ||||||||||    
T  3361765 tcactatgctaccatcatcattggtccgag 3361794  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 3372464 - 3372558
Alignment:
Q  71 tcattttcatgatggacaaagtgtttaccggcaggtgtgattgcatgaactctcacaatgctaccatcattgttggtccgagtggaaatggacag 165  Q
    ||||||||||  | |||||| | |||||| |  ||||||||  ||| ||||||||| |||||||||||||  ||||||||||| ||||| |||||    
T  3372464 tcattttcatacttgacaaaatatttaccagatggtgtgatcccataaactctcactatgctaccatcatcattggtccgagtagaaatagacag 3372558  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 479 - 586
Target Start/End: Complemental strand, 11877918 - 11877813
Alignment:
Q  479 tttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaannnnnnnnnnnntaacaccaggaaaagtgtttttccaaag 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  11877918 tttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaa--atatatatattaacaccaggaaaagtgtttttccaaag 11877821  T
Q  579 agtctttt 586  Q
    ||||||||    
T  11877820 agtctttt 11877813  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 23992967 - 23992914
Alignment:
Q  300 tagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaa 353  Q
    |||||||||||||||| || ||||||||||||||||| |||| |||||||||||    
T  23992967 tagcaatgatatcaaataatttgagttcaattgcagcattaagaactgcaggaa 23992914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 20721128 - 20721206
Alignment:
Q  193 catacggtcaagcctatttggtaagtcggagtattgagttattggtaactttgaagcaatttcgaaagccgacacaaatcca 274  Q
    ||||||||| || ||||||||||| ||||||| |||||||   ||||||||| ||||||||||| | ||||||| |||||||    
T  20721128 catacggtcgagtctatttggtaaatcggagtgttgagtt---ggtaactttaaagcaatttcgtaggccgacataaatcca 20721206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 20721214 - 20721285
Alignment:
Q  300 tagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaaccta 371  Q
    |||||||||||||||| || ||||| ||||||||||| |||| || ||||||||| |||||| | |||||||    
T  20721214 tagcaatgatatcaaataatttgagctcaattgcagcattaagaattgcaggaaaaaccatagtagaaccta 20721285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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