View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_4 (Length: 533)
Name: NF8541_low_4
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_4 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 15 - 515
Target Start/End: Complemental strand, 111055 - 110557
Alignment:
| Q |
15 |
gacatcacgttcttaataataaaaagagtactaaacatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgt |
114 |
Q |
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| T |
111055 |
gacatcacgttcttaataataaaaagagtactaagcatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgt |
110956 |
T |
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| Q |
115 |
acttcaaaattattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattag |
214 |
Q |
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| T |
110955 |
acttcaaaattattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattag |
110856 |
T |
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| Q |
215 |
cctgtaagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataaagaaatcatagaatcacacaaaccgatttcagcataca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
110855 |
cctgtaagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataa--aaatcatagaatcacaccaaccgatttcagcataca |
110758 |
T |
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| Q |
315 |
cttatagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaatgatttccatcg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
110757 |
cttatagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaaagatttccatcg |
110658 |
T |
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| Q |
415 |
catcttgctttatcaattgaacacaggatttcatttcaacaaatatcacgatcaaaattaaattctctgcaatttcaccggttaacacaaactgtgatct |
514 |
Q |
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| T |
110657 |
catcttgctttatcaattgaacacaggatttcatttcaacaaatatcacggtcaaaattaaattctctgcaatttcaccggttaacacaaactgtgatct |
110558 |
T |
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