View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8541_low_5 (Length: 440)
Name: NF8541_low_5
Description: NF8541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8541_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 55091631 - 55092041
Alignment:
| Q |
17 |
catcaccttcaccttttcgctcttcttcacttctcaaagacatttctaacttcaaaacccccaaacgcgcttc------ttcttcttttctatctcaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
55091631 |
catcaccttcaccttttcgctcttcttcacttttcaaagacatttctaacttcaaaacccccaaacgcgcttcttcttcttcttcttttctctctcaaca |
55091730 |
T |
|
| Q |
111 |
acatactcctcaaactcaattcttcaccgcttccaaatccaaacacaccacaacactcccgaggaggccgagactcaaagaaaatcataccatttcaact |
210 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55091731 |
acatactcctcaaactcaatttttcaccgcttccaaatccaaacacaccacaacactcccgaggaggccgagactcaaagaaaatcataccatttcaact |
55091830 |
T |
|
| Q |
211 |
gcttcaaagaaactcaaagcttttcaactcgaacaatctcactcctccagaatcgaacaaatcaaaaaacaacaatcgcttaaatcgttagccaaatcac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
55091831 |
gcttcaaagaaactcaaagcttttcaactcgaacaatctcactcctccagaatcgaacaaatcaaacaacaacaatcgcttaaatcgttagccaaatcac |
55091930 |
T |
|
| Q |
311 |
tcactgtttggcttaatttccttctcgaatcacctgcttcttgcggttgcgatgtttcaatcgccggtggaagtcagatcgcagatgcttctccggtgtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55091931 |
tcactgtttggcttaatttccttctcgaatcacctgcttcttgcggttgcgatgtttcaatcgccggtggaagtcagatcgcagatgcttctccggtgac |
55092030 |
T |
|
| Q |
411 |
gagtaagggga |
421 |
Q |
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||||||||||| |
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| T |
55092031 |
gagtaagggga |
55092041 |
T |
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